ArticlePloS one2018
Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.).
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed, 75 citations in OpenAlex.
- Advancing anthracnose resistance in dry beans through the transition from traditional to computational breeding efforts.Frontiers in plant science · 2026Review
- Genomic Prediction of Adaptation in Common Bean (International journal of molecular sciences · 2025Article
- Molecular mechanisms and regulation of recombination frequency and distribution in plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- High Genetic Diversity in the Himalayan Common Bean (ACS omega · 2023Article
- A Study of GUS Expression inPlants (Basel, Switzerland) · 2023Article
- Whole-genome resequencing reveals genetic differences and the genetic basis of parapodium number in Russian and Chinese Apostichopus japonicus.BMC genomics · 2023Article
- Mapping yield and yield-related traits using diverse common bean germplasm.Frontiers in genetics · 2023Article
- Genome-wide association mapping for component traits of drought tolerance in dry beans (Phaseolus vulgaris L.).PloS one · 2023Article
- Editorial: Harnessing genebanks: High-throughput phenotyping and genotyping of crop wild relatives and landraces.Frontiers in plant science · 2023Article
- Genetic Augmentation of Legume Crops Using Genomic Resources and Genotyping Platforms for Nutritional Food Security.Plants (Basel, Switzerland) · 2022Review
- Genome-Wide Identification of theInternational journal of molecular sciences · 2022Article
- QTL mapping and identification of genes associated with the resistance to Acanthoscelides obtectus in cultivated common bean using a high-density genetic linkage map.BMC plant biology · 2022Article
- Genome-wide association studies dissect the genetic architecture of seed shape and size in common bean.G3 (Bethesda, Md.) · 2022Article
- Whole-Genome Sequencing and Annotation of the YeastJournal of fungi (Basel, Switzerland) · 2022Article
- Innovation in the Breeding of Common Bean Through a Combined Approach ofFrontiers in genetics · 2022Article
- Inheritance of Yield Components and Morphological Traits in Avocado cv. Hass From "Criollo" "Elite Trees"Frontiers in plant science · 2022Article
- Genome-Environment Associations, an Innovative Tool for Studying Heritable Evolutionary Adaptation in Orphan Crops and Wild Relatives.Frontiers in genetics · 2022Review
- Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1.Plants (Basel, Switzerland) · 2021Article
- Genetic diversity and inter-gene pool introgression of Mesoamerican Diversity Panel in common beans.Journal of applied genetics · 2021Article
- Review
Corrections and comments
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Authors and funding
9 authors at 6 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recombination (R) rate and linkage disequilibrium (LD) analyses are the basis for plant breeding. These vary by breeding system, by generation of inbreeding or outcrossing and by region in the chromosome. Common bean (Phaseolus vulgaris L.) is a favored food legume with a small sequenced genome (514 Mb) and n = 11 chromosomes. The goal of this study was to describe R and LD in the common bean genome using a 768-marker array of single nucleotide polymorphisms (SNP) based on Trans-legume Orthologous Group (TOG) genes along with an advanced-generation Recombinant Inbred Line reference mapping population (BAT93 x Jalo EEP558) and an internationally available diversity panel. A whole genome genetic map was created that covered all eleven linkage groups (LG). The LGs were linked to the physical map by sequence data of the TOGs compared to each chromosome sequence of common bean. The genetic map length in total was smaller than for previous maps reflecting the precision of allele calling and mapping with SNP technology as well as the use of gene-based markers. A total of 91.4% of TOG markers had singleton hits with annotated Pv genes and all mapped outside of regions of resistance gene clusters. LD levels were found to be stronger within the Mesoamerican genepool and decay more rapidly within the Andean genepool. The recombination rate across the genome was 2.13 cM / Mb but R was found to be highly repressed around centromeres and frequent outside peri-centromeric regions. These results have important implications for association and genetic mapping or crop improvement in common bean.
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