Evidence map›Paper›PMID 29518739›Full record

ArticleDNA repair2018

Importance of homo-dimerization of Fanconi-associated nuclease 1 in DNA flap cleavage.

Timsi Rao, Simonne Longerich, Weixing Zhao, Hideki Aihara, Patrick Sung, Yong Xiong

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Timsi RaoDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA.
Simonne LongerichDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA.
Weixing ZhaoDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA.
Hideki AiharaDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA.
Patrick SungDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA. Electronic address: patrick.sung@yale.edu.
Yong XiongDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA. Electronic address: yong.xiong@yale.edu.
Yale University · USUniversity of Minnesota · US

Funding

YEAST DNA REPAIR GENES AND PROTEINS OF THE RAD52 GROUPR01ES007061 · NIEHS · YALE UNIVERSITY · PI Patrick Sung · 1995 to 2026
$9.4M
Structural studies of viral replication and invasionR35GM118047 · NIGMS · UNIVERSITY OF MINNESOTA · PI Hideki Aihara · 2016 to 2026
$6.3M
Mechanistic Dissection of the Fanconi Anemia Pathway of DNA Damage Response and RR01CA168635 · NCI · YALE UNIVERSITY · PI Gary M Kupfer, Patrick Sung · 2013 to 2026
$5.8M
NCI NIH HHS R01 CA168635NIEHS NIH HHS R01 ES007061NIGMS NIH HHS R35 GM118047
6 · The paper itself

Abstract

Fanconi-associated nuclease 1 (FAN1) removes interstrand DNA crosslinks (ICLs) through its DNA flap endonuclease and exonuclease activities. Crystal structures of human and bacterial FAN1 bound to a DNA flap have been solved. The Pseudomonas aeruginosa bacterial FAN1 and human FAN1 (hFAN1) missing a flexible loop are monomeric, while intact hFAN1 is homo-dimeric in structure. Importantly, the monomeric and dimeric forms of FAN1 exhibit very different DNA binding modes. Here, we interrogate the functional differences between monomeric and dimeric forms of FAN1 and provide an explanation for the discrepancy in oligomeric state between the two hFAN1 structures. Specifically, we show that the flexible loop in question is needed for hFAN1 dimerization. While monomeric and dimeric bacterial or human FAN1 proteins cleave a short 5' flap strand with similar efficiency, optimal cleavage of a long 5' flap strand is contingent upon protein dimerization. Our study therefore furnishes biochemical evidence for a role of hFAN1 homodimerization in biological processes that involve 5' DNA Flap cleavage.

Indexed as

DNA CleavageBacterial ProteinsDeoxyribonucleasesDNA AdductsEndodeoxyribonucleasesExodeoxyribonucleasesHumansMultifunctional EnzymesProtein MultimerizationPseudomonas aeruginosaBacterial ProteinsDeoxyribonucleasesDNA AdductsEndodeoxyribonucleasesExodeoxyribonucleasesFAN1 protein, humanMultifunctional EnzymesFAN1FA pathwayICLInterstrand crosslink repair

Identifiers

PMID29518739
PMCPMC7105229
OpenAlexW2951288028

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.