Evidence map›Paper›PMID 29518410›Full record

ArticleJournal of molecular biology2018

Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis.

Molly C Sutherland, Joshua M Jarodsky, Sergey Ovchinnikov, David Baker, Robert G Kranz

Abstract read
In one paragraph

Article in Journal of molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Nutrients · 2024
    Article
  6. Article
  7. Article
  8. Recombinant Biogenesis and Analysis of Cytochrome c Species.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The CcmC-CcmE interaction during cytochromeThe Journal of biological chemistry · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Molly C SutherlandDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Joshua M JarodskyDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Sergey OvchinnikovDepartment of Biochemistry, University of Washington, Seattle, WA 98105, USA.
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98105, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98105, USA.
Robert G KranzDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA. Electronic address: kranz@wustl.edu.

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
MOLECULAR GENETIC ANALYSES OF CYTOCHROMES C BIOGENESISR01GM047909 · NIGMS · WASHINGTON UNIVERSITY · PI KRANZ, ROBERT G. · 1994 to 2019
$6.0M
The bacterial holocytochrome c synthetasesF32GM115020 · NIGMS · WASHINGTON UNIVERSITY · PI SUTHERLAND, MOLLY CUDDY · 2015 to 2017
$147k
NIGMS NIH HHS F32 GM115020NIGMS NIH HHS R01 GM047909NIGMS NIH HHS T32 GM007270
6 · The paper itself

Abstract

Although many putative heme transporters have been discovered, it has been challenging to prove that these proteins are directly involved with heme trafficking in vivo and to identify their heme binding domains. The prokaryotic pathways for cytochrome c biogenesis, Systems I and II, transport heme from inside the cell to outside for stereochemical attachment to cytochrome c, making them excellent models to study heme trafficking. System I is composed of eight integral membrane proteins (CcmA-H) and is proposed to transport heme via CcmC to an external "WWD" domain for presentation to the membrane-tethered heme chaperone, CcmE. Herein, we develop a new cysteine/heme crosslinking approach to trap and map endogenous heme in CcmC (WWD domain) and CcmE (defining "2-vinyl" and "4-vinyl" pockets for heme). Crosslinking occurs when either of the two vinyl groups of heme localize near a thiol of an engineered cysteine residue. Double crosslinking, whereby both vinyls crosslink to two engineered cysteines, facilitated a more detailed structural mapping of the heme binding sites, including stereospecificity. Using heme crosslinking results, heme ligand identification, and genomic coevolution data, we model the structure of the CcmCDE complex, including the WWD heme binding domain. We conclude that CcmC trafficks heme via its WWD domain and propose the structural basis for stereochemical attachment of heme.

Indexed as

Bacterial Outer Membrane ProteinsBacterial ProteinsBinding SitesCysteineCytochromes cEscherichia coliEscherichia coli ProteinsHemeHemeproteinsMembrane ProteinsModels, MolecularMultiprotein ComplexesMutationProtein BindingProtein TransportBacterial Outer Membrane ProteinsBacterial ProteinsCcmC protein, bacteriaCcmE protein, E coliCysteineCytochromes cEscherichia coli ProteinsHemeHemeproteinsMembrane ProteinsMultiprotein ComplexesCcmC structurecytochrome c biogenesishemeheme binding siteheme trafficking

Identifiers

PMID29518410
PMCPMC5889519

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.