Evidence map›Paper›PMID 29517483›Full record

ArticleThe Journal of general virology2018

Fish polyomaviruses belong to two distinct evolutionary lineages.

Koenraad Van Doorslaer, Simona Kraberger, Charlotte Austin, Kata Farkas, Melissa Bergeman, Emma Paunil, William Davison, Arvind Varsani

Open access · hybridAbstract read
In one paragraph

Article in The Journal of general virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

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  13. Biology of Polyomavirus miRNA.Frontiers in microbiology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Koenraad Van DoorslaerCancer Biology Graduate Interdisciplinary Program, Genetics Graduate Interdisciplinary Program, Bio5 Institute, and the University of Arizona Cancer Center University of Arizona, 1657 E Helen St., Tucson, AZ 85721, USA.
Simona KrabergerThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA.
Charlotte AustinSchool of Biological Sciences, University of Canterbury, Christchurch, New Zealand.
Kata FarkasSchool of Biological Sciences, University of Canterbury, Christchurch, New Zealand.
Melissa BergemanSchool of Animal and Comparative Biomedical Sciences, University of Arizona, 1657 E Helen St., Tucson, AZ 85721, USA.
Emma PaunilSchool of Animal and Comparative Biomedical Sciences, University of Arizona, 1657 E Helen St., Tucson, AZ 85721, USA.
William DavisonSchool of Biological Sciences, University of Canterbury, Christchurch, New Zealand.
Arvind VarsaniThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA.
University of Arizona · USArizona State University · USUniversity of Canterbury · NZBangor University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Polyomaviridae is a diverse family of circular double-stranded DNA viruses. Polyomaviruses have been isolated from a wide array of animal hosts. An understanding of the evolutionary and ecological dynamics of these viruses is essential to understanding the pathogenicity of polyomaviruses. Using a high throughput sequencing approach, we identified a novel polyomavirus in an emerald notothen (Trematomus bernacchii) sampled in the Ross sea (Antarctica), expanding the known number of fish-associated polyomaviruses. Our analysis suggests that polyomaviruses belong to three main evolutionary clades; the first clade is made up of all recognized terrestrial polyomaviruses. The fish-associated polyomaviruses are not monophyletic, and belong to two divergent evolutionary lineages. The fish viruses provide evidence that the evolution of the key viral large T protein involves gain and loss of distinct domains.

Indexed as

Evolution, MolecularAnimalsAntarctic RegionsAntigens, Viral, TumorFish DiseasesPerciformesPhylogenyPolyomavirusPolyomavirus InfectionsProtein DomainsAntigens, Viral, TumorAntarcticaemerald notothenPolyomaviridaeTrematomus bernacchii

Identifiers

PMID29517483
PMCPMC5982132
OpenAlexW2792318507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.