Evidence map›Paper›PMID 29516737›Full record

ArticleJournal of the American Chemical Society2018

Role of Ligand-Driven Conformational Changes in Enzyme Catalysis: Modeling the Reactivity of the Catalytic Cage of Triosephosphate Isomerase.

Yashraj S Kulkarni, Qinghua Liao, Fabian Byléhn, Tina L Amyes, John P Richard, Shina C L Kamerlin

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. How enzymes harness highly unfavorable proton transfer reactions.Protein science : a publication of the Protein Society · 2021
    Review
  11. Article
  12. Article
  13. Harnessing Conformational Plasticity to Generate Designer Enzymes.Journal of the American Chemical Society · 2020
    Review
  14. Enhancing aChemical science · 2020
    Article
  15. Review
  16. Article
  17. Computational Studies of Catalytic Loop Dynamics inThe journal of physical chemistry. B · 2019
    Article
  18. Protein Flexibility and Stiffness Enable Efficient Enzymatic Catalysis.Journal of the American Chemical Society · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yashraj S KulkarniScience for Life Laboratory, Department of Cell and Molecular Biology , Uppsala University , BMC Box 596, S-751 24 Uppsala , Sweden.
Qinghua LiaoScience for Life Laboratory, Department of Cell and Molecular Biology , Uppsala University , BMC Box 596, S-751 24 Uppsala , Sweden.ORCID 0000-0002-2260-8493
Fabian ByléhnScience for Life Laboratory, Department of Cell and Molecular Biology , Uppsala University , BMC Box 596, S-751 24 Uppsala , Sweden.
Tina L AmyesDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.
John P RichardDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.ORCID 0000-0002-0440-2387
Shina C L KamerlinScience for Life Laboratory, Department of Cell and Molecular Biology , Uppsala University , BMC Box 596, S-751 24 Uppsala , Sweden.ORCID 0000-0002-3190-1173

Funding

REACTIVE INTERMEDIATES OF ENZYMATIC REACTIONSR01GM039754 · NIGMS · UNIVERSITY OF KENTUCKY · PI RICHARD, JOHN P · 1993 to 2012
$3.9M
Activation of Enzymes for Catalysis: The Role of Substrate-Induced Structural ChangesR01GM116921 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RICHARD, JOHN P · 2016 to 2019
$1.3M
NIGMS NIH HHS R01 GM039754NIGMS NIH HHS R01 GM116921
6 · The paper itself

Abstract

We have previously performed empirical valence bond calculations of the kinetic activation barriers, Δ G

Indexed as

BiocatalysisLigandsMolecular StructureProtein ConformationThermodynamicsTriose-Phosphate IsomeraseLigandsTriose-Phosphate Isomerase

Identifiers

PMID29516737
PMCPMC5867644

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.