Evidence map›Paper›PMID 29514911›Full record

ArticleJournal of virology2018

A Stem-Loop Structure in

Yi Xu, Ho-Jong Ju, Stacy DeBlasio, Elizabeth J Carino, Richard Johnson, Michael J MacCoss, Michelle Heck, W Allen Miller, Stewart M Gray

Abstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

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  13. Polerovirus genomic variation.Virus evolution · 2021
    Article
  14. Tissue-specific dynamic codon redefinition inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yi XuSection of Plant Pathology and Plant-Microbe Biology, School of Integrated Plant Science, Cornell University, Ithaca, New York, USA.
Ho-Jong JuSection of Plant Pathology and Plant-Microbe Biology, School of Integrated Plant Science, Cornell University, Ithaca, New York, USA.
Stacy DeBlasioEmerging Pests and Pathogens Research Unit, USDA, ARS, Ithaca, New York, USA.
Elizabeth J CarinoDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa, USA.
Richard JohnsonDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Michael J MacCossDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Michelle HeckEmerging Pests and Pathogens Research Unit, USDA, ARS, Ithaca, New York, USA.ORCID https://orcid.org/0000-0003-0921-4489
W Allen MillerDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa, USA wamiller@iastate.edu smg3@cornell.edu.
Stewart M GraySection of Plant Pathology and Plant-Microbe Biology, School of Integrated Plant Science, Cornell University, Ithaca, New York, USA wamiller@iastate.edu smg3@cornell.edu.
Agricultural Research Service · USCornell University · USIowa State University · USUniversity of Washington · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
Control of cap-independent translation by a viral 3' UTRR01GM067104 · NIGMS · IOWA STATE UNIVERSITY · PI MILLER, WYATT ALLEN · 2003 to 2016
$3.0M
NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM067104
6 · The paper itself

Abstract

Translational readthrough of the stop codon of the capsid protein (CP) open reading frame (ORF) is used by members of the

Indexed as

Nucleic Acid ConformationAmino Acid SequenceBase SequenceCapsid ProteinsCodon, TerminatorInverted Repeat SequencesLuteoviridaeNicotianaOpen Reading FramesPlant DiseasesProtein BiosynthesisRNA, ViralSequence DeletionSolanumCapsid ProteinsCodon, TerminatorRNA, ViralpolerovirusreadthroughRNA structuresystemic infectiontranslational control

Identifiers

PMID29514911
PMCPMC5952135
OpenAlexW2793282448

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.