Evidence map›Paper›PMID 29514909›Full record

ArticleJournal of virology2018

HIV-1 Nef Antagonizes SERINC5 Restriction by Downregulation of SERINC5 via the Endosome/Lysosome System.

Jing Shi, Ran Xiong, Tao Zhou, Peiyi Su, Xihe Zhang, Xusheng Qiu, Hongmei Li, Sunan Li, Changqing Yu, Bin Wang and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. SERINC5 counters retroviruses and non-retroviruses.Frontiers in cellular and infection microbiology · 2024
    Review
  14. Review
  15. Article
  16. Article
  17. HIV-1 restriction by SERINC5.Medical microbiology and immunology · 2023
    Review
  18. Article
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Jing ShiHarbin Veterinary Research Institute, CAAS-Michigan State University Joint Laboratory of Innate Immunity, State Key Laboratory of Veterinary Biotechnology, Chinese Academy of Agricultural Sciences, Harbin, China.
Ran XiongDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Tao ZhouDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Peiyi SuDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Xihe ZhangDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Xusheng QiuShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China.
Hongmei LiDepartment of Pathology, Qiqihar Medical University, Qiqihar, China.
Sunan LiHarbin Veterinary Research Institute, CAAS-Michigan State University Joint Laboratory of Innate Immunity, State Key Laboratory of Veterinary Biotechnology, Chinese Academy of Agricultural Sciences, Harbin, China.
Changqing YuHarbin Veterinary Research Institute, CAAS-Michigan State University Joint Laboratory of Innate Immunity, State Key Laboratory of Veterinary Biotechnology, Chinese Academy of Agricultural Sciences, Harbin, China.
Bin WangHarbin Veterinary Research Institute, CAAS-Michigan State University Joint Laboratory of Innate Immunity, State Key Laboratory of Veterinary Biotechnology, Chinese Academy of Agricultural Sciences, Harbin, China.
Chan DingShanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai, China.
Thomas E SmithgallDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Yong-Hui ZhengHarbin Veterinary Research Institute, CAAS-Michigan State University Joint Laboratory of Innate Immunity, State Key Laboratory of Veterinary Biotechnology, Chinese Academy of Agricultural Sciences, Harbin, China zhengyo@msu.edu.ORCID https://orcid.org/0000-0002-1098-7385
Chinese Academy of Agricultural Sciences · CNMichigan State University · USShanghai Veterinary Research Institute · CNUniversity of Pittsburgh · US

Funding

Small Molecule Inhibitors of HIV Nef SignalingR01AI057083 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SMITHGALL, THOMAS E. · 2003 to 2019
$5.1M
Structural Biology of HIV-1 Nef with Host Effectors and Small Molecule InhibitorsR01AI102724 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ALVARADO, JOHN JEFF, SMITHGALL, THOMAS E. · 2013 to 2017
$1.9M
The role of SERINC5 in HIV-1 replicationR01AI145504 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ZHENG, YONG-HUI · 2019 to 2023
$1.5M
To eradicate the HIV macrophage reservoirR01AI120189 · NIAID · MICHIGAN STATE UNIVERSITY · PI ZHENG, YONG-HUI · 2015 to 2017
$589k
Structural Biology of HIV-1 Nef with Host Effectors and Small Molecule InhibitorsR56AI102724 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SMITHGALL, THOMAS E. · 2019 to 2019
$468k
Mechanism of HIV-1 Env Degradation by the ERAD pathwayR21AI122863 · NIAID · MICHIGAN STATE UNIVERSITY · PI ZHENG, YONG-HUI · 2016 to 2017
$426k
NIAID NIH HHS R01 AI057083NIAID NIH HHS R01 AI102724NIAID NIH HHS R01 AI120189NIAID NIH HHS R01 AI145504NIAID NIH HHS R21 AI122863NIAID NIH HHS R56 AI102724
6 · The paper itself

Abstract

The primate lentiviral accessory protein Nef downregulates CD4 and major histocompatibility complex class I (MHC-I) from the cell surface via independent endosomal trafficking pathways to promote viral pathogenesis. In addition, Nef antagonizes a novel restriction factor, SERINC5 (Ser5), to increase viral infectivity. To explore the molecular mechanism of Ser5 antagonism by Nef, we determined how Nef affects Ser5 expression and intracellular trafficking in comparison to CD4 and MHC-I. We confirm that Nef excludes Ser5 from human immunodeficiency virus type 1 (HIV-1) virions by downregulating its cell surface expression via similar functional motifs required for CD4 downregulation. We find that Nef decreases both Ser5 and CD4 expression at steady-state levels, which are rescued by NH

Indexed as

Adaptor Protein Complex 2CD4 AntigensCell Line, TumorDown-RegulationEndocytosisEnzyme InhibitorsHEK293 CellsHeLa CellsHIV-1HLA-A AntigensHumansJurkat CellsLysosomal-Associated Membrane Protein 1Lysosomal Membrane ProteinsLysosomesMacrolidesAdaptor Protein Complex 2bafilomycin A1CD4 AntigensEnzyme InhibitorsHLA-A AntigensLAMP1 protein, humanLysosomal-Associated Membrane Protein 1Lysosomal Membrane ProteinsMacrolidesMembrane Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1rab11 GTP-Binding ProteinsRAB5C protein, humanrab5 GTP-Binding Proteinsrab7 GTP-Binding Proteinsrab7 GTP-binding proteins, humanrab GTP-Binding ProteinsSERINC5 protein, humanCD4downregulationendocytosisMHC-INefrestriction factorSERINC5

Identifiers

PMID29514909
PMCPMC5952139
OpenAlexW2792634933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.