Evidence map›Paper›PMID 29514634›Full record

ArticleBMC genomics2018

Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis.

C Desert, E Baéza, M Aite, M Boutin, A Le Cam, J Montfort, M Houee-Bigot, Y Blum, P F Roux, C Hennequet-Antier and 9 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 60 citations in OpenAlex.

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  8. Frontiers in veterinary science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

C DesertPegase, INRA, Agrocampus Ouest, 35042, Rennes, France. colette.desert@agrocampus-ouest.fr.
E BaézaUra, INRA, 37380, Nouzilly, France.
M AitePegase, INRA, Agrocampus Ouest, 35042, Rennes, France.
M BoutinPegase, INRA, Agrocampus Ouest, 35042, Rennes, France.
A Le CamLPGP, INRA, 35000, Rennes, France.
J MontfortLPGP, INRA, 35000, Rennes, France.
M Houee-BigotUMR6625, Agrocampus Ouest, IRMAR, 35000, Rennes, France.
Y BlumPegase, INRA, Agrocampus Ouest, 35042, Rennes, France.
P F RouxPegase, INRA, Agrocampus Ouest, 35042, Rennes, France.
C Hennequet-AntierUra, INRA, 37380, Nouzilly, France.
C BerriUra, INRA, 37380, Nouzilly, France.
S Metayer-CoustardUra, INRA, 37380, Nouzilly, France.
A CollinUra, INRA, 37380, Nouzilly, France.
S AllaisPegase, INRA, Agrocampus Ouest, 35042, Rennes, France.
E Le BihanUra, INRA, 37380, Nouzilly, France.
D CauseurUMR6625, Agrocampus Ouest, IRMAR, 35000, Rennes, France.
F GondretPegase, INRA, Agrocampus Ouest, 35042, Rennes, France.
M J DuclosUra, INRA, 37380, Nouzilly, France.
S LagarriguePegase, INRA, Agrocampus Ouest, 35042, Rennes, France. sandrine.lagarrigue@agrocampus-ouest.fr.
Biologie des Oiseaux et Aviculture · FRPhysiologie Environnement et Génétique pour l'Animal et les Systèmes d'Elevage · FRInstitut Agro Rennes-Angers · FRFish Physiology and Genomics Institute · FRInserm · FRInstitut de recherche mathématique de Rennes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBecause the cost of cereals is unstable and represents a large part of production charges for meat-type chicken, there is an urge to formulate alternative diets from more cost-effective feedstuff. We have recently shown that meat-type chicken source is prone to adapt to dietary starch substitution with fat and fiber. The aim of this study was to better understand the molecular mechanisms of this adaptation to changes in dietary energy sources through the fine characterization of transcriptomic changes occurring in three major metabolic tissues - liver, adipose tissue and muscle - as well as in circulating blood cells.

resultsWe revealed the fine-tuned regulation of many hepatic genes encoding key enzymes driving glycogenesis and de novo fatty acid synthesis pathways and of some genes participating in oxidation. Among the genes expressed upon consumption of a high-fat, high-fiber diet, we highlighted CPT1A, which encodes a key enzyme in the regulation of fatty acid oxidation. Conversely, the repression of lipogenic genes by the high-fat diet was clearly associated with the down-regulation of SREBF1 transcripts but was not associated with the transcript regulation of MLXIPL and NR1H3, which are both transcription factors. This result suggests a pivotal role for SREBF1 in lipogenesis regulation in response to a decrease in dietary starch and an increase in dietary PUFA. Other prospective regulators of de novo hepatic lipogenesis were suggested, such as PPARD, JUN, TADA2A and KAT2B, the last two genes belonging to the lysine acetyl transferase (KAT) complex family regulating histone and non-histone protein acetylation. Hepatic glycogenic genes were also down-regulated in chickens fed a high-fat, high-fiber diet compared to those in chickens fed a starch-based diet. No significant dietary-associated variations in gene expression profiles was observed in the other studied tissues, suggesting that the liver mainly contributed to the adaptation of birds to changes in energy source and nutrients in their diets, at least at the transcriptional level. Moreover, we showed that PUFA deposition observed in the different tissues may not rely on transcriptional changes.

conclusionWe showed the major role of the liver, at the gene expression level, in the adaptive response of chicken to dietary starch substitution with fat and fiber.

Indexed as

LipogenesisAnimalsChickensDietary FiberDiet, High-FatGene Expression RegulationLiverMeatStarchTranscription, GeneticTranscriptomeDietary FiberStarchAdaptationChickenFat dietGene expressionLipidPUFARegulationSREBF1TADA2A

Identifiers

PMID29514634
PMCPMC5842524
OpenAlexW2794836125

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.