Evidence map›Paper›PMID 29514227›Full record

ArticleNucleic acids research2018

Enzymatic synthesis of cyclic dinucleotide analogs by a promiscuous cyclic-AMP-GMP synthetase and analysis of cyclic dinucleotide responsive riboswitches.

Katherine D Launer-Felty, Scott A Strobel

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. 10th anniversary of discovering cGAMP: synthesis and beyond.Organic chemistry frontiers : an international journal of organic chemistry · 2023
    Article
  4. Review
  5. Article
  6. Tuning the Innate Immune Response to Cyclic Dinucleotides by Using Atomic Mutagenesis.Chembiochem : a European journal of chemical biology · 2020
    Article
  7. Enzymatic Syntheses and Applications of Fluorescent Cyclic Dinucleotides.Chemistry (Weinheim an der Bergstrasse, Germany) · 2020
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Katherine D Launer-FeltyDepartment of Molecular Biophysics and Biochemistry and Department of Chemistry, Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
Scott A StrobelDepartment of Molecular Biophysics and Biochemistry and Department of Chemistry, Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
Yale University · US

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
In vitro and in vivo characterization of the cyclic-di-GMP riboswitchF32GM115097 · NIGMS · YALE UNIVERSITY · PI LAUNER-FELTY, KATHERINE D · 2016 to 2017
$112k
NIGMS NIH HHS F32 GM115097NIGMS NIH HHS P01 GM022778
6 · The paper itself

Abstract

Cyclic dinucleotides are second messenger molecules produced by both prokaryotes and eukaryotes in response to external stimuli. In bacteria, these molecules bind to RNA riboswitches and several protein receptors ultimately leading to phenotypic changes such as biofilm formation, ion transport and secretion of virulence factors. Some cyclic dinucleotide analogs bind differentially to biological receptors and can therefore be used to better understand cyclic dinucleotide mechanisms in vitro and in vivo. However, production of some of these analogs involves lengthy, multistep syntheses. Here, we describe a new, simple method for enzymatic synthesis of several 3', 5' linked cyclic dinucleotide analogs of c-di-GMP, c-di-AMP and c-AMP-GMP using the cyclic-AMP-GMP synthetase, DncV. The enzymatic reaction efficiently produced most cyclic dinucleotide analogs, such as 2'-amino sugar substitutions and phosphorothioate backbone modifications, for all three types of cyclic dinucleotides without the use of protecting groups or organic solvents. We used these novel analogs to explore differences in phosphate backbone and 2'-hydroxyl recognition between GEMM-I and GEMM-Ib riboswitches.

Indexed as

AlgorithmsBacterial ProteinsCyclic GMPDinucleoside PhosphatesKineticsLigasesMagnesiumMolecular StructureNucleotides, CyclicProtein BindingVibrio choleraeBacterial Proteinsbis(3',5')-cyclic diguanylic acidcyclic diadenosine phosphateCyclic GMPcyclic guanosine monophosphate-adenosine monophosphateDinucleoside PhosphatesLigasesMagnesiumNucleotides, Cyclic

Identifiers

PMID29514227
PMCPMC5888326
OpenAlexW2790358881

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.