Evidence map›Paper›PMID 29513743›Full record

ArticlePloS one2018

Retinal guanylyl cyclase activating protein 1 forms a functional dimer.

Sunghyuk Lim, Graham Roseman, Igor Peshenko, Grace Manchala, Diana Cudia, Alexander M Dizhoor, Glenn Millhauser, James B Ames

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. cGMP Signaling in Photoreceptor Degeneration.International journal of molecular sciences · 2023
    Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. A NovelInternational journal of molecular sciences · 2021
    Article
  9. Review
  10. Review
  11. Article
  12. Impaired CaInternational journal of molecular sciences · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Calcium Sensors in Neuronal Function and Dysfunction.Cold Spring Harbor perspectives in biology · 2019
    Review
  18. Article
  19. Dimerization of Neuronal Calcium Sensor Proteins.Frontiers in molecular neuroscience · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sunghyuk LimDepartment of Chemistry, University of California, Davis, CA, United States of America.
Graham RosemanDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, United States of America.
Igor PeshenkoPennsylvania College of Optometry, Salus University, Elkins Park, PA, United States of America.
Grace ManchalaDepartment of Chemistry, University of California, Davis, CA, United States of America.
Diana CudiaDepartment of Chemistry, University of California, Davis, CA, United States of America.
Alexander M DizhoorPennsylvania College of Optometry, Salus University, Elkins Park, PA, United States of America.
Glenn MillhauserDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, United States of America.
James B AmesDepartment of Chemistry, University of California, Davis, CA, United States of America.ORCID 0000-0003-0934-2595
University of California, Davis · USSalus University · USUniversity of California, Santa Cruz · US

Funding

REGULATION OF CYCLIC GMP SYNTHESIS IN PHOTORECEPTORSR01EY011522 · NEI · WAYNE STATE UNIVERSITY · PI ALEXANDER M DIZHOOR · 1996 to 2026
$9.9M
MEMBRANE TARGETING CALCIUM SENSORS IN VISIONR01EY012347 · NEI · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI AMES, JAMES B · 1999 to 2023
$6.9M
NEI NIH HHS R01 EY011522NEI NIH HHS R01 EY012347NIH HHS EY012347
6 · The paper itself

Abstract

Retinal guanylyl cyclases (RetGCs) in vertebrate photoreceptors are regulated by the guanylyl cyclase activator proteins (GCAP1 and GCAP2). Here, we report EPR double electron-electron resonance (DEER) studies on the most ubiquitous GCAP isoform, GCAP1 and site-directed mutagenesis analysis to determine an atomic resolution structural model of a GCAP1 dimer. Nitroxide spin-label probes were introduced at individual GCAP1 residues: T29C, E57C, E133C, and E154C. The intermolecular distance of each spin-label probe (measured by DEER) defined restraints for calculating the GCAP1 dimeric structure by molecular docking. The DEER-derived structural model of the GCAP1 dimer was similar within the experimental error for both the Mg2+-bound activator and Ca2+-bound inhibitor states (RMSD < 2.0 Å). The GCAP1 dimer possesses intermolecular hydrophobic contacts involving the side chain atoms of H19, Y22, F73 and V77. The structural model of the dimer was validated by GCAP1 mutations (H19R, Y22D, F73E, and V77E) at the dimer interface that each abolished protein dimerization. Previous studies have shown that each of these mutants either diminished or completely suppressed the ability of GCAP1 to activate the cyclase. These results suggest that GCAP1 dimerization may affect compartmentalization of GCAP1 in the photoreceptors and/or affect regulation of the cyclase activity.

Indexed as

Allosteric RegulationAmino Acid MotifsAmino Acid SequenceAnimalsCatalysisCattleDimerizationElectron Spin Resonance SpectroscopyGuanylate Cyclase-Activating ProteinsModels, MolecularMolecular Docking SimulationMutagenesis, Site-DirectedProtein ConformationRecombinant ProteinsSpin LabelsGuanylate Cyclase-Activating ProteinsRecombinant ProteinsSpin Labels

Identifiers

PMID29513743
PMCPMC5841803
OpenAlexW2793858787

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.