Evidence map›Paper›PMID 29511216›Full record

ArticleScientific reports2018

Direct Detection of Unamplified Pathogen RNA in Blood Lysate using an Integrated Lab-in-a-Stick Device and Ultrabright SERS Nanorattles.

Hoan T Ngo, Elizabeth Freedman, Ren Abelard Odion, Pietro Strobbia, Agampodi Swarnapali De Silva Indrasekara, Priya Vohra, Steve M Taylor, Tuan Vo-Dinh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Hoan T NgoFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA.ORCID 0000-0001-8609-1123
Elizabeth FreedmanFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA.
Ren Abelard OdionFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA.
Pietro StrobbiaFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA.
Agampodi Swarnapali De Silva IndrasekaraFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA.
Priya VohraFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA.
Steve M TaylorFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA.
Tuan Vo-DinhFitzpatrick Institute for Photonics, Duke University, Durham, NC, 27708, USA. tuan.vodinh@duke.edu.ORCID 0000-0003-3701-3326
Duke University · USVietnam National University Ho Chi Minh City · VN

Funding

Molecular pathogenesis and genetic diversification of childhood falciparum malariK08AI100924 · NIAID · DUKE UNIVERSITY · PI TAYLOR, STEVE MYER · 2012 to 2016
$611k
Bloodborne tropical pathogen detection using multiple nanophotonic arraysR21AI120981 · NIAID · DUKE UNIVERSITY · PI TAYLOR, STEVE MYER, VO-DINH, TUAN · 2016 to 2017
$407k
NIAID NIH HHS K08 AI100924NIAID NIH HHS R21 AI120981
6 · The paper itself

Abstract

Direct detection of genetic biomarkers in body fluid lysate without target amplification will revolutionize nucleic acid-based diagnostics. However, the low concentration of target sequences makes this goal challenging. We report a method for direct detection of pathogen RNA in blood lysate using a bioassay using surface-enhanced Raman spectroscopy (SERS)-based detection integrated in a "lab-in-a-stick" portable device. Two levels of signal enhancement were employed to achieve the sensitivity required for direct detection. Each target sequence was tagged with an ultrabright SERS-encoded nanorattle with ultrahigh SERS signals, and these tagged target sequences were concentrated into a focused spot for detection using hybridization sandwiches with magnetic microbeads. Furthermore, the washing process was automated by integration into a "lab-in-a-stick" portable device. We could directly detect synthetic target with a limit of detection of 200 fM. More importantly, we detected plasmodium falciparum malaria parasite RNA directly in infected red blood cells lysate. To our knowledge, this is the first report of SERS-based direct detection of pathogen nucleic acid in blood lysate without nucleic acid extraction or target amplification. The results show the potential of our integrated bioassay for field use and point-of-care diagnostics.

Indexed as

Lab-On-A-Chip DevicesBlood CellsMalaria, FalciparumMolecular Diagnostic TechniquesNucleic Acid HybridizationPoint-of-Care TestingRNA, ProtozoanSensitivity and SpecificitySpectrum Analysis, RamanRNA, Protozoan

Identifiers

PMID29511216
PMCPMC5840326
OpenAlexW2807288497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.