Evidence map›Paper›PMID 29507735›Full record

ReviewHorticulture research2018

An integrated approach for increasing breeding efficiency in apple and peach in Europe.

Francois Laurens, Maria José Aranzana, Pere Arus, Daniele Bassi, Marco Bink, Joan Bonany, Andrea Caprera, Luca Corelli-Grappadelli, Evelyne Costes, Charles-Eric Durel and 12 more

Open access · goldAbstract readReview
In one paragraph

Review in Horticulture research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
19.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Molecular breeding : new strategies in plant improvement · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Genome-Wide Analysis ofInternational journal of molecular sciences · 2022
    Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 11 institutions in 6 countries.

Francois LaurensIRHS, INRA, Agrocampus-Ouest, Université d'Angers, SFR 4207 QuaSaV, Université Bretagne Loire, 42 rue Georges Morel, Beaucouzé, 49071 France.
Maria José Aranzana2IRTA (Institut de Recerca i Tecnologia Agroalimentàries), Barcelona, Spain.
Pere Arus2IRTA (Institut de Recerca i Tecnologia Agroalimentàries), Barcelona, Spain.
Daniele Bassi4Università degli Studi di Milano - DiSAA, Via Celoria 2, Milan, 20133 Italy.
Marco Bink5Biometris, Wageningen University and Research, Droevendaalsesteeg 1, Wageningen, 6708PB The Netherlands.
Joan BonanyIRTA-Mas Badia, Mas Badia, La Tallada, 17134 Spain.
Andrea CapreraParco Tecnologico Padano, Via Einstein, Loc. Cascina Codazza, Lodi, 26900 Italy.
Luca Corelli-Grappadelli8Dipartimento di Scienze Agrarie, Alma Mater Studiorum - Università di Bologna, Bologna, Italy.
Evelyne Costes9UMR AGAP, INRA, Montpellier, 34398 France.
Charles-Eric Durel10GAFL, INRA, Montfavet, 84143 France.
Jehan-Baptiste MaurouxAgroscope, Research Division Plant Breeding, Schloss 1, Wädenswil, 8820 Switzerland.
Hélène MurantyIRHS, INRA, Agrocampus-Ouest, Université d'Angers, SFR 4207 QuaSaV, Université Bretagne Loire, 42 rue Georges Morel, Beaucouzé, 49071 France.
Nelson NazzicariParco Tecnologico Padano, Via Einstein, Loc. Cascina Codazza, Lodi, 26900 Italy.
Thierry Pascal10GAFL, INRA, Montfavet, 84143 France.
Andrea Patocchi10GAFL, INRA, Montfavet, 84143 France.
Andreas PeilJulius Kühn-Institute (JKI); Federal Research Centre for Cultivated Plants, Institute for Breeding Research on Fruit Crops, Pillnitzer Platz 3a, Dresden, 01326 Germany.
Bénédicte Quilot-TurionAgroscope, Research Division Plant Breeding, Schloss 1, Wädenswil, 8820 Switzerland.
Laura Rossini4Università degli Studi di Milano - DiSAA, Via Celoria 2, Milan, 20133 Italy.
Alessandra StellaParco Tecnologico Padano, Via Einstein, Loc. Cascina Codazza, Lodi, 26900 Italy.
Michela Troggio13Research and Innovation Center, Fondazione Edmund Mach, San Michele all'Adige, Trento, Italy.
Riccardo Velasco13Research and Innovation Center, Fondazione Edmund Mach, San Michele all'Adige, Trento, Italy.
Eric van de Weg15Plant Breeding, Wageningen University and Research, Droevendaalsesteeg 1, P.O.Box 386, Wageningen, 6700AJ The Netherlands.ORCID 0000-0002-9443-5974
Génétique et amélioration des fruits et légumes · FRInstitut Agro Rennes-Angers · FRInstitute of Agrifood Research and Technology · ESParco Tecnologico Padano · ITFondazione Edmund Mach · ITUniversity of Milan · ITAmélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales · FRHendrix Genetics (Netherlands) · NLJulius Kühn-Institut · DEUniversity of Bologna · ITWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the availability of whole genome sequences of apple and peach, there has been a considerable gap between genomics and breeding. To bridge the gap, the European Union funded the FruitBreedomics project (March 2011 to August 2015) involving 28 research institutes and private companies. Three complementary approaches were pursued: (i) tool and software development, (ii) deciphering genetic control of main horticultural traits taking into account allelic diversity and (iii) developing plant materials, tools and methodologies for breeders. Decisive breakthroughs were made including the making available of ready-to-go DNA diagnostic tests for Marker Assisted Breeding, development of new, dense SNP arrays in apple and peach, new phenotypic methods for some complex traits, software for gene/QTL discovery on breeding germplasm via Pedigree Based Analysis (PBA). This resulted in the discovery of highly predictive molecular markers for traits of horticultural interest via PBA and via Genome Wide Association Studies (GWAS) on several European genebank collections. FruitBreedomics also developed pre-breeding plant materials in which multiple sources of resistance were pyramided and software that can support breeders in their selection activities. Through FruitBreedomics, significant progresses were made in the field of apple and peach breeding, genetics, genomics and bioinformatics of which advantage will be made by breeders, germplasm curators and scientists. A major part of the data collected during the project has been stored in the FruitBreedomics database and has been made available to the public. This review covers the scientific discoveries made in this major endeavour, and perspective in the apple and peach breeding and genomics in Europe and beyond.

Identifiers

PMID29507735
PMCPMC5830435
OpenAlexW2796270477

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.