Evidence map›Paper›PMID 29507419›Full record

ArticleOncogene2018

EZH2 regulates neuroblastoma cell differentiation via NTRK1 promoter epigenetic modifications.

Zhenghao Li, Hisanori Takenobu, Amallia Nuggetsiana Setyawati, Nobuhiro Akita, Masayuki Haruta, Shunpei Satoh, Yoshitaka Shinno, Koji Chikaraishi, Kyosuke Mukae, Jesmin Akter and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Oncogene, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Zhenghao Li *Research Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Hisanori Takenobu *Research Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Amallia Nuggetsiana SetyawatiChiba Cancer Center Research Institute, Chiba, Chiba, Japan.
Nobuhiro AkitaChiba Cancer Center Research Institute, Chiba, Chiba, Japan.
Masayuki HarutaResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Shunpei SatohResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Yoshitaka ShinnoResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Koji ChikaraishiResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Kyosuke MukaeResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Jesmin AkterResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Ryuichi P SuginoResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Atsuko NakazawaDepartment of Clinical Research, Saitama Children's Medical Center, Saitama, Saitama, Japan.
Akira NakagawaraSaga Medical Center KOSEIKAN, Life Science Research Institute, Saga, Japan.
Hiroyuki AburataniDivision of Genome Science, Research Center for Advanced Science and Technology, University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0003-0438-1544
Miki OhiraResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan.
Takehiko KamijoResearch Institute for Clinical Oncology, Saitama Cancer Center, Saitama, Japan. tkamijo@cancer-c.pref.saitama.jp.
Saitama Cancer Center · JPChiba Cancer Center · JPChiba University · JPDiponegoro University · IDSaga-Ken Medical Centre Koseikan · JPSaitama Children's Medical Center · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The polycomb repressor complex 2 molecule EZH2 is now known to play a role in essential cellular processes, namely, cell fate decisions, cell cycle regulation, senescence, cell differentiation, and cancer development/progression. EZH2 inhibitors have recently been developed; however, their effectiveness and underlying molecular mechanisms in many malignancies have not yet been elucidated in detail. Although the functional role of EZH2 in tumorigenesis in neuroblastoma (NB) has been investigated, mutations of EZH2 have not been reported. A Kaplan-Meier analysis on the event free survival and overall survival of NB patients indicated that the high expression of EZH2 correlated with an unfavorable prognosis. In order to elucidate the functional roles of EZH2 in NB tumorigenesis and its aggressiveness, we knocked down EZH2 in NB cell lines using lentivirus systems. The knockdown of EZH2 significantly induced NB cell differentiation, e.g., neurite extension, and the neuronal differentiation markers, NF68 and GAP43. EZH2 inhibitors also induced NB cell differentiation. We performed a comprehensive transcriptome analysis using Human Gene Expression Microarrays and found that NTRK1 (TrkA) is one of the EZH2-related suppression targets. The depletion of NTRK1 canceled EZH2 knockdown-induced NB cell differentiation. Our integrative methylome, transcriptome, and chromatin immunoprecipitation assays using NB cell lines and clinical samples clarified that the NTRK1 P1 and P2 promoter regions were regulated differently by DNA methylation and EZH2-related histone modifications. The NTRK1 transcript variants 1/2, which were regulated by EZH2-related H3K27me3 modifications at the P1 promoter region, were strongly expressed in favorable, but not unfavorable NB. The depletion and inhibition of EZH2 successfully induced NTRK1 transcripts and functional proteins. Collectively, these results indicate that EZH2 plays important roles in preventing the differentiation of NB cells and also that EZH2-related NTRK1 transcriptional regulation may be the key pathway for NB cell differentiation.

Indexed as

DNA MethylationHistone CodeCell DifferentiationCell Line, TumorCell ProliferationEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticGene Expression ProfilingGene Expression Regulation, NeoplasticGene Knockdown TechniquesHistonesHumansNeuroblastomaPrognosisPromoter Regions, GeneticReceptor, trkAEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanHistonesNTRK1 protein, humanReceptor, trkA

Identifiers

PMID29507419
PMCPMC5955864
OpenAlexW2793601014

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.