Evidence map›Paper›PMID 29507413›Full record

ArticleNature neuroscience2018

Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease.

Raffaella Nativio, Greg Donahue, Amit Berson, Yemin Lan, Alexandre Amlie-Wolf, Ferit Tuzer, Jon B Toledo, Sager J Gosai, Brian D Gregory, Claudio Torres and 5 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature neuroscience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 213 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
213citing papers in PubMed, 4 pooled it
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

213 citing papers in PubMed, 4 syntheses or guidelines pooled it, 374 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. A systematic review on the risk of neurodegenerative diseases and neurocognitive disorders in professional and varsity athletes.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2022
    Pooled it
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

153 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Raffaella NativioEpigenetics Program, Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Greg DonahueEpigenetics Program, Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Amit BersonDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
Yemin LanEpigenetics Program, Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Alexandre Amlie-WolfDepartment of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-2073-1519
Ferit TuzerDepartment of Pathology, Drexel University College of Medicine, Philadelphia, PA, USA.
Jon B ToledoDepartment of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-4366-9268
Sager J GosaiDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
Brian D GregoryDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA.
Claudio TorresDepartment of Pathology, Drexel University College of Medicine, Philadelphia, PA, USA.
John Q TrojanowskiDepartment of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Li-San WangDepartment of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.
F Brad JohnsonDepartment of Pathology & Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA. johnsonb@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0002-7443-7227
Nancy M BoniniDepartment of Biology, University of Pennsylvania, Philadelphia, PA, USA. nbonini@sas.upenn.edu.ORCID http://orcid.org/0000-0003-0226-5291
Shelley L BergerEpigenetics Program, Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. bergers@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0001-5398-4400
University of Pennsylvania · USDrexel University · US

Funding

Transgenic Mouse Models of Tau PathologiesP01AG017586 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M · 2000 to 2021
$37.3M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
UPenn ADCC Biomarker CoreP30AG010124 · NIA · UNIVERSITY OF PENNSYLVANIA · PI XIE, SHARON XIANGWEN · 1991 to 2020
$35.1M
Molecular Genetic Insight into Neurodegenerative Disease from DrosophilaR35NS097275 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI BONINI, NANCY M · 2017 to 2024
$6.0M
Epigenetic Changes associated with Neurodegenerative DiseasesR01NS078283 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI BERGER, SHELLEY L, BONINI, NANCY M · 2012 to 2016
$3.3M
NIA NIH HHS P01 AG017586NIA NIH HHS P30 AG010124NIEHS NIH HHS P30 ES013508NINDS NIH HHS R01 NS078283NINDS NIH HHS R35 NS097275
6 · The paper itself

Abstract

Aging is the strongest risk factor for Alzheimer's disease (AD), although the underlying mechanisms remain unclear. The chromatin state, in particular through the mark H4K16ac, has been implicated in aging and thus may play a pivotal role in age-associated neurodegeneration. Here we compare the genome-wide enrichment of H4K16ac in the lateral temporal lobe of AD individuals against both younger and elderly cognitively normal controls. We found that while normal aging leads to H4K16ac enrichment, AD entails dramatic losses of H4K16ac in the proximity of genes linked to aging and AD. Our analysis highlights the presence of three classes of AD-related changes with distinctive functional roles. Furthermore, we discovered an association between the genomic locations of significant H4K16ac changes with genetic variants identified in prior AD genome-wide association studies and with expression quantitative trait loci. Our results establish the basis for an epigenetic link between aging and AD.

Indexed as

AgingAlzheimer DiseaseAgedAnalysis of VarianceBrainChromatin ImmunoprecipitationEpigenesis, GeneticEpigenomicsFemaleGenome-Wide Association StudyHistone Deacetylase 1HumansMaleMiddle AgedHDAC1 protein, humanHistone Deacetylase 1

Identifiers

PMID29507413
PMCPMC6124498
OpenAlexW2791286257

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.