Evidence map›Paper›PMID 29506198›Full record

ArticleBioinformatics (Oxford, England)2018

anexVis: visual analytics framework for analysis of RNA expression.

Diem-Trang Tran, Tian Zhang, Ryan Stutsman, Matthew Might, Umesh R Desai, Balagurunathan Kuberan

Abstract read
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In one paragraph

Article in Bioinformatics (Oxford, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
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0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Diem-Trang TranDepartment of Medicinal Chemistry.
Tian ZhangSchool of Computing, University of Utah, Salt Lake City, UT, USA.
Ryan StutsmanSchool of Computing, University of Utah, Salt Lake City, UT, USA.
Matthew MightHugh Kaul Personalized Medicine Institute, University of Alabama at Birmingham, Birmingham, AL, USA.
Umesh R DesaiDepartment of Medicinal Chemistry, Virginia Commonwealth University, Richmond, VA, USA.
Balagurunathan KuberanDepartment of Medicinal Chemistry.

Funding

University of Alabama at Birmingham's Diabetes Research CenterP30DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Kirk Michael Habegger · 2013 to 2026
$19.5M
Therapeutic assessment of synthetic heparin sulfates in transplantation modelsP01HL107152 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI DESAI, UMESH RAMANLAL · 2011 to 2017
$15.8M
NHLBI NIH HHS P01 HL107152NIDDK NIH HHS P30 DK079626
6 · The paper itself

Abstract

Summary: Although RNA expression data are accumulating at a remarkable speed, gaining insights from them still requires laborious analyses, which hinder many biological and biomedical researchers. This report introduces a visual analytics framework that applies several well-known visualization techniques to leverage understanding of an RNA expression dataset. Our analyses on glycosaminoglycan-related genes have demonstrated the broad application of this tool, anexVis (analysis of RNA expression), to advance the understanding of tissue-specific glycosaminoglycan regulation and functions, and potentially other biological pathways. Availability and implementation: The application is accessible at https://anexvis.chpc.utah.edu/, source codes deposited on GitHub. Supplementary information: Supplementary data are available at Bioinformatics online.

Indexed as

Data VisualizationSoftwareGene Expression ProfilingGlycosaminoglycansHumansSequence Analysis, RNAGlycosaminoglycans

Identifiers

PMID29506198
PMCPMC6041878

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.