Evidence map›Paper›PMID 29505562›Full record

ArticlePLoS genetics2018

SUMO E3 ligase Mms21 prevents spontaneous DNA damage induced genome rearrangements.

Jason Liang, Bin-Zhong Li, Alexander P Tan, Richard D Kolodner, Christopher D Putnam, Huilin Zhou

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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  13. The plasma peptides of ovarian cancer.Clinical proteomics · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jason LiangLudwig Institute for Cancer Research, University of California School of Medicine, San Diego, La Jolla, California, United States of America.
Bin-Zhong LiLudwig Institute for Cancer Research, University of California School of Medicine, San Diego, La Jolla, California, United States of America.
Alexander P TanLudwig Institute for Cancer Research, University of California School of Medicine, San Diego, La Jolla, California, United States of America.
Richard D KolodnerLudwig Institute for Cancer Research, University of California School of Medicine, San Diego, La Jolla, California, United States of America.ORCID 0000-0002-4806-8384
Christopher D PutnamLudwig Institute for Cancer Research, University of California School of Medicine, San Diego, La Jolla, California, United States of America.ORCID 0000-0002-6145-1265
Huilin ZhouLudwig Institute for Cancer Research, University of California School of Medicine, San Diego, La Jolla, California, United States of America.ORCID 0000-0002-1350-4430
University of California San Diego · USLudwig Cancer Research · US

Funding

Contemporary Approaches to Cancer Cell Signaling and CommunicationT32CA009523 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DONOGHUE, DANIEL J, YANG, JING · 1985 to 2025
$12.1M
ENZYMATIC MECHANISMS OF GENETIC RECOMBINATIONR01GM026017 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Richard D Kolodner · 1985 to 2026
$10.5M
Suppression of duplication-mediated genome rearrangements by protein sumoylationR01GM116897 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHOU, HUILIN · 2015 to 2023
$2.6M
ENZYMATIC MECHANISMS OF GENETIC RECOMBINATIONR37GM026017 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KOLODNER, RICHARD D · 1992 to 2001
$759k
NCI NIH HHS T32 CA009523NIGMS NIH HHS R01 GM026017NIGMS NIH HHS R01 GM116897NIGMS NIH HHS R37 GM026017
6 · The paper itself

Abstract

Mms21, a subunit of the Smc5/6 complex, possesses an E3 ligase activity for the Small Ubiquitin-like MOdifier (SUMO). Here we show that the mms21-CH mutation, which inactivates Mms21 ligase activity, causes increased accumulation of gross chromosomal rearrangements (GCRs) selected in the dGCR assay. These dGCRs are formed by non-allelic homologous recombination between divergent DNA sequences mediated by Rad52-, Rrm3- and Pol32-dependent break-induced replication. Combining mms21-CH with sgs1Δ caused a synergistic increase in GCRs rates, indicating the distinct roles of Mms21 and Sgs1 in suppressing GCRs. The mms21-CH mutation also caused increased rates of accumulating uGCRs mediated by breakpoints in unique sequences as revealed by whole genome sequencing. Consistent with the accumulation of endogenous DNA lesions, mms21-CH mutants accumulate increased levels of spontaneous Rad52 and Ddc2 foci and had a hyper-activated DNA damage checkpoint. Together, these findings support that Mms21 prevents the accumulation of spontaneous DNA lesions that cause diverse GCRs.

Indexed as

Chromosomes, FungalDNA DamageDNA-Directed DNA PolymeraseDNA RepairEndodeoxyribonucleasesEpistasis, GeneticExodeoxyribonucleasesGenome, FungalMutationRad52 DNA Repair and Recombination ProteinRecQ HelicasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSUMO-1 ProteinDNA-Directed DNA PolymeraseEndodeoxyribonucleasesExodeoxyribonucleasesMms21 protein, S cerevisiaeMRE11 protein, S cerevisiaePol32 protein, S cerevisiaeRad52 DNA Repair and Recombination ProteinRAD52 protein, S cerevisiaeRecQ HelicasesSaccharomyces cerevisiae ProteinsSGS1 protein, S cerevisiaeSUMO-1 Protein

Identifiers

PMID29505562
PMCPMC5860785
OpenAlexW2952822665

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.