Evidence map›Paper›PMID 29504934›Full record

ArticleeLife2018

Mechanochemical coupling and bi-phasic force-velocity dependence in the ultra-fast ring ATPase SpoIIIE.

Ninning Liu, Gheorghe Chistol, Yuanbo Cui, Carlos Bustamante

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Optical tweezers in single-molecule biophysics.Nature reviews. Methods primers · 2021
    Article
  5. Milestones inMicrobial cell (Graz, Austria) · 2020
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ninning Liu *Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, United States.ORCID http://orcid.org/0000-0002-8398-9584
Gheorghe Chistol *Jason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, United States.
Yuanbo CuiJason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, United States.
Carlos BustamanteJason L. Choy Laboratory of Single Molecule Biophysics, University of California, Berkeley, Berkeley, United States.ORCID http://orcid.org/0000-0002-2970-0073

Funding

THE PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR01GM032543 · NIGMS · UNIVERSITY OF OREGON · PI CARLOS Jose BUSTAMANTE · 1985 to 2026
$6.4M
Mechanisms of Viral DNA PackagingR01GM071552 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUSTAMANTE, CARLOS JOSE · 2004 to 2015
$4.7M
NIGMS NIH HHS R01 GM032543NIH HHS R01GM032543NIH HHS R01GM071552
6 · The paper itself

Abstract

Multi-subunit ring-shaped ATPases are molecular motors that harness chemical free energy to perform vital mechanical tasks such as polypeptide translocation, DNA unwinding, and chromosome segregation. Previously we reported the intersubunit coordination and stepping behavior of the hexameric ring-shaped ATPase SpoIIIE (Liu et al., 2015). Here we use optical tweezers to characterize the motor's mechanochemistry. Analysis of the motor response to external force at various nucleotide concentrations identifies phosphate release as the likely force-generating step. Analysis of SpoIIIE pausing indicates that pauses are off-pathway events. Characterization of SpoIIIE slipping behavior reveals that individual motor subunits engage DNA upon ATP binding. Furthermore, we find that SpoIIIE's velocity exhibits an intriguing bi-phasic dependence on force. We hypothesize that this behavior is an adaptation of ultra-fast motors tasked with translocating DNA from which they must also remove DNA-bound protein roadblocks. Based on these results, we formulate a comprehensive mechanochemical model for SpoIIIE.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsDNAMechanical PhenomenaModels, BiologicalModels, ChemicalMolecular Motor ProteinsProtein BindingAdenosine TriphosphatasesBacterial ProteinsDNAMolecular Motor Proteinsspore-specific proteins, BacillusbiochemistryB. subtilischemical biologyFtsk/SpoIIIEmechanochemistrymolecular biophysicsoptical tweezersRing ATPasesingle-moleculestructural biology

Identifiers

PMID29504934
PMCPMC5858925

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.