Evidence map›Paper›PMID 29503207›Full record

ArticleCell chemical biology2018

Snapshots of C-S Cleavage in Egt2 Reveals Substrate Specificity and Reaction Mechanism.

Seema Irani, Nathchar Naowarojna, Yang Tang, Karan R Kathuria, Shu Wang, Anxhela Dhembi, Norman Lee, Wupeng Yan, Huijue Lyu, Catherine E Costello and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

  1. Metabolic engineering ofSynthetic and systems biotechnology · 2026
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  11. HAntioxidants & redox signaling · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Seema IraniDepartment of Chemical Engineering, University of Texas at Austin, Austin, TX 78712, USA.
Nathchar NaowarojnaDepartment of Chemistry, Boston University, Boston, MA 02215, USA.
Yang TangDepartment of Chemistry, Boston University, Boston, MA 02215, USA; Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, MA 02118, USA.
Karan R KathuriaDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.
Shu WangDepartment of Chemistry, Boston University, Boston, MA 02215, USA.
Anxhela DhembiDepartment of Chemistry, Boston University, Boston, MA 02215, USA.
Norman LeeDepartment of Chemistry, Boston University, Boston, MA 02215, USA.
Wupeng YanDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.
Huijue LyuDepartment of Chemistry, Boston University, Boston, MA 02215, USA.
Catherine E CostelloDepartment of Chemistry, Boston University, Boston, MA 02215, USA; Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, MA 02118, USA.
Pinghua LiuDepartment of Chemistry, Boston University, Boston, MA 02215, USA. Electronic address: pinghua@bu.edu.
Yan Jessie ZhangDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA; Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA. Electronic address: jzhang@cm.utexas.edu.
Boston University · USThe University of Texas at Austin · US

Funding

Mass Spectrometry Resource for Biology and MedicineP41GM104603 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2012 to 2017
$10.4M
Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Mechanistic studies of enzymes in isoprenoid biosynthesisR01GM093903 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI LIU, PINGHUA · 2010 to 2014
$1.5M
NIGMS NIH HHS P41 GM104603NIGMS NIH HHS R01 GM093903NIGMS NIH HHS R01 GM104896
6 · The paper itself

Abstract

Sulfur incorporation in the biosynthesis of ergothioneine, a histidine thiol derivative, differs from other well-characterized transsulfurations. A combination of a mononuclear non-heme iron enzyme-catalyzed oxidative C-S bond formation and a subsequent pyridoxal 5'-phosphate (PLP)-mediated C-S lyase reaction leads to the net transfer of a sulfur atom from a cysteine to a histidine. In this study, we structurally and mechanistically characterized a PLP-dependent C-S lyase Egt2, which mediates the sulfoxide C-S bond cleavage in ergothioneine biosynthesis. A cation-π interaction between substrate and enzyme accounts for Egt2's preference of sulfoxide over thioether as a substrate. Using mutagenesis and structural biology, we captured three distinct states of the Egt2 C-S lyase reaction cycle, including a labile sulfenic intermediate captured in Egt2 crystals. Chemical trapping and high-resolution mass spectrometry were used to confirm the involvement of the sulfenic acid intermediate in Egt2 catalysis.

Indexed as

Biosynthetic PathwaysCatalytic DomainCrystallography, X-RayErgothioneineFungal ProteinsLyasesNeurospora crassaProtein ConformationPyridoxal PhosphateSubstrate SpecificitySulfenic AcidsErgothioneineFungal ProteinsLyasesPyridoxal PhosphateSulfenic Acidsbiosynthetic pathwaychemical trappingC-S bond cleavageenzymologyergothioneineX-ray crystallography

Identifiers

PMID29503207
PMCPMC5959753
OpenAlexW2791928416

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.