Evidence map›Paper›PMID 29502240›Full record

ArticlePhotosynthesis research2018

The role of charge-transfer states in the spectral tuning of antenna complexes of purple bacteria.

Michele Nottoli, Sandro Jurinovich, Lorenzo Cupellini, Alastair T Gardiner, Richard Cogdell, Benedetta Mennucci

Abstract read
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In one paragraph

Article in Photosynthesis research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michele NottoliDipartimento di Chimica e Chimica Industriale, University of Pisa, Via G. Moruzzi 13, I-56124, Pisa, Italy.
Sandro JurinovichDipartimento di Chimica e Chimica Industriale, University of Pisa, Via G. Moruzzi 13, I-56124, Pisa, Italy.
Lorenzo CupelliniDipartimento di Chimica e Chimica Industriale, University of Pisa, Via G. Moruzzi 13, I-56124, Pisa, Italy.
Alastair T GardinerGlasgow Biomedical Research Centre, Institute of Molecular Cell and Systems Biology, University of Glasgow, 126 University Place, Glasgow, G12 8TA, Scotland, UK.
Richard CogdellGlasgow Biomedical Research Centre, Institute of Molecular Cell and Systems Biology, University of Glasgow, 126 University Place, Glasgow, G12 8TA, Scotland, UK.
Benedetta MennucciDipartimento di Chimica e Chimica Industriale, University of Pisa, Via G. Moruzzi 13, I-56124, Pisa, Italy. benedetta.mennucci@unipi.it.ORCID http://orcid.org/0000-0002-4394-0129

Funding

U.S. Department of Energy (US) DE-SC 0001035
6 · The paper itself

Abstract

The LH2 antenna complexes of purple bacteria occur, depending on light conditions, in various different spectroscopic forms, with a similar structure but different absorption spectra. The differences are related to point changes in the primary amino acid sequence, but the molecular-level relationship between these changes and the resulting spectrum is still not well understood. We undertook a systematic quantum chemical analysis of all the main factors that contribute to the exciton structure, looking at how the environment modulates site energies and couplings in the B800-850 and B800-820 spectroscopic forms of LH2. A multiscale approach combining quantum chemistry and an atomistic classical embedding has been used where mutual polarization effects between the two parts are taken into account. We find that the loss of hydrogen bonds following amino acid changes can only explain a part of the observed blue-shift in the B850 band. The coupling of excitonic states to charge-transfer states, which is different in the two forms, contributes with a similar amount to the overall blue-shift.

Indexed as

Bacterial ProteinsCatalytic DomainLight-Harvesting Protein ComplexesProtein ConformationRhodopseudomonasBacterial ProteinsLight-Harvesting Protein ComplexesAntenna complexExcitonic modelQuantum chemistry

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.