Evidence map›Paper›PMID 29500362›Full record

ArticleScientific reports2018

Computationally-Guided Development of a Stromal Inflammation Histologic Biomarker in Lung Squamous Cell Carcinoma.

Daniel Xia, Ruben Casanova, Devayani Machiraju, Trevor D McKee, Walter Weder, Andrew H Beck, Alex Soltermann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Prognostic Value of Selected Histologic Features for Lung Squamous Cell Carcinoma.Exploratory research and hypothesis in medicine · 2022
    Article
  9. Review
  10. Review
  11. Article
  12. IASLC Multidisciplinary Recommendations for Pathologic Assessment of Lung Cancer Resection Specimens After Neoadjuvant Therapy.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2020
    Review
  13. Deep Learning Based on Standard H&E Images of Primary Melanoma Tumors Identifies Patients at Risk for Visceral Recurrence and Death.Clinical cancer research : an official journal of the American Association for Cancer Research · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Daniel XiaDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA. daniel.xia@uhn.ca.
Ruben CasanovaInstitute of Pathology, University Hospital Zurich, Zurich, Switzerland.
Devayani MachirajuInstitute of Pathology, University Hospital Zurich, Zurich, Switzerland.
Trevor D McKeeSTTARR Innovation Centre, University Health Network, Toronto, ON, Canada.
Walter WederDivision of Thoracic Surgery, University Hospital Zurich, Zurich, Switzerland.
Andrew H BeckDepartment of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School Boston, Boston, MA, USA.
Alex SoltermannInstitute of Pathology, University Hospital Zurich, Zurich, Switzerland. alex.soltermann@usz.ch.
University Hospital of Zurich · CHUniversity Health Network · CABeth Israel Deaconess Medical Center · US

Funding

INFORMATICS METHODS AND MODELS FOR COMPUTATIONAL PATHOLOGYK22LM011931 · NLM · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BECK, ANDREW H · 2014 to 2016
$476k
NLM NIH HHS K22 LM011931
6 · The paper itself

Abstract

The goal of this study is to use computational pathology to help guide the development of human-based prognostic H&E biomarker(s) suitable for research and potential clinical use in lung squamous cell carcinoma (SCC). We started with high-throughput computational image analysis with tissue microarrays (TMAs) to screen for histologic features associated with patient overall survival, and found that features related to stromal inflammation were the most strongly prognostic. Based on this, we developed an H&E stromal inflammation (SI) score. The prognostic value of the SI score was validated by two blinded human observers on two large cohorts from a single institution. The SI score was found to be reproducible on TMAs (Spearman rho = 0.88 between the two observers), and highly prognostic (e.g. hazard ratio = 0.32; 95% confidence interval: 0.19-0.54; p-value = 2.5 × 10

Indexed as

Computer SimulationBiomarkers, TumorCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellCohort StudiesDatasets as TopicFemaleHumansInflammationMalePrognosisReproducibility of ResultsRetrospective StudiesStromal CellsTissue Array AnalysisBiomarkers, Tumor

Identifiers

PMID29500362
PMCPMC5834457
OpenAlexW2789989802

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.