Evidence map›Paper›PMID 29500317›Full record

ArticleBioscience reports2020

The mechanism of a one-substrate transketolase reaction.

Olga N Solovjeva, Marina V Kovina, Maria G Zavialova, Victor G Zgoda, Dmitrii S Shcherbinin, German A Kochetov

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. New Role of Water in Transketolase Catalysis.International journal of molecular sciences · 2023
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Olga N SolovjevaBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992 Moscow, Russian Federation.
Marina V KovinaAdvanced Cell Technologies Department, Sechenov First Moscow State Medical University (Sechenov University), Trubetskaya Street 8, 119991 Moscow, Russian Federation.
Maria G ZavialovaInstitute of Biomedical Chemistry, Pogodinskaya 10, 119121 Moscow, Russian Federation.
Victor G ZgodaInstitute of Biomedical Chemistry, Pogodinskaya 10, 119121 Moscow, Russian Federation.
Dmitrii S ShcherbininInstitute of Biomedical Chemistry, Pogodinskaya 10, 119121 Moscow, Russian Federation.
German A KochetovBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992 Moscow, Russian Federation.
Institute of Biomedical Chemistry · RULomonosov Moscow State University · RUSechenov University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transketolase catalyzes the transfer of a glycolaldehyde residue from ketose (the donor substrate) to aldose (the acceptor substrate). In the absence of aldose, transketolase catalyzes a one-substrate reaction that involves only ketose. The mechanism of this reaction is unknown. Here, we show that hydroxypyruvate serves as a substrate for the one-substrate reaction and, as well as with the xylulose-5-phosphate, the reaction product is erythrulose rather than glycolaldehyde. The amount of erythrulose released into the medium is equimolar to a double amount of the transformed substrate. This could only be the case if the glycol aldehyde formed by conversion of the first ketose molecule (the product of the first half reaction) remains bound to the enzyme, waiting for condensation with the second molecule of glycol aldehyde. Using mass spectrometry of catalytic intermediates and their subsequent fragmentation, we show here that interaction of the holotransketolase with hydroxypyruvate results in the equiprobable binding of the active glycolaldehyde to the thiazole ring of thiamine diphosphate and to the amino group of its aminopyrimidine ring. We also show that these two loci can accommodate simultaneously two glycolaldehyde molecules. It explains well their condensation without release into the medium, which we have shown earlier.

Indexed as

Binding SitesCatalytic DomainKineticsMolecular Dynamics SimulationPentosephosphatesProtein BindingProtein ConformationPyruvatesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpectrometry, Mass, Electrospray IonizationStructure-Activity RelationshipSubstrate SpecificityTandem Mass SpectrometryTetrosesTransketolaseerythrulosehydroxypyruvic acidPentosephosphatesPyruvatesSaccharomyces cerevisiae ProteinsTetrosesTransketolasexylulose-5-phosphatemass-spectrometrythiamine catalysistransketolase

Identifiers

PMID29500317
PMCPMC7403953
OpenAlexW2793793050

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.