Evidence map›Paper›PMID 29499643›Full record

ArticleBMC genomics2018

Identification of placental nutrient transporters associated with intrauterine growth restriction and pre-eclampsia.

Xiao Huang, Pascale Anderle, Lu Hostettler, Marc U Baumann, Daniel V Surbek, Edgar C Ontsouka, Christiane Albrecht

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 74 citations in OpenAlex.

  1. Pooled it
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  10. Evidence for hypoxia-induced dysregulated cholesterol homeostasis in preeclampsia: Insights into the mechanisms from human placental cells and tissues.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
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  15. Association of theFrontiers in molecular biosciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Xiao HuangSwiss National Centre of Competence in Research, NCCR TransCure, University of Bern, Bern, Switzerland.
Pascale AnderleSwiss Institute of Bioinformatics and HSeT Foundation, Lausanne, Switzerland.
Lu HostettlerInstitute of Biochemistry and Molecular Medicine, Faculty of Medicine, University of Bern, Bern, Switzerland.
Marc U BaumannSwiss National Centre of Competence in Research, NCCR TransCure, University of Bern, Bern, Switzerland.
Daniel V SurbekSwiss National Centre of Competence in Research, NCCR TransCure, University of Bern, Bern, Switzerland.
Edgar C OntsoukaSwiss National Centre of Competence in Research, NCCR TransCure, University of Bern, Bern, Switzerland.
Christiane AlbrechtSwiss National Centre of Competence in Research, NCCR TransCure, University of Bern, Bern, Switzerland. christiane.albrecht@ibmm.unibe.ch.ORCID 0000-0002-7846-6930
University of Bern · CHSIB Swiss Institute of Bioinformatics · CH

Funding

NCCR TransCure 35900Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 310030_149958
6 · The paper itself

Abstract

backgroundGestational disorders such as intrauterine growth restriction (IUGR) and pre-eclampsia (PE) are main causes of poor perinatal outcomes worldwide. Both diseases are related with impaired materno-fetal nutrient transfer, but the crucial transport mechanisms underlying IUGR and PE are not fully elucidated. In this study, we aimed to identify membrane transporters highly associated with transplacental nutrient deficiencies in IUGR/PE.

resultsIn silico analyses on the identification of differentially expressed nutrient transporters were conducted using seven eligible microarray datasets (from Gene Expression Omnibus), encompassing control and IUGR/PE placental samples. Thereby 46 out of 434 genes were identified as potentially interesting targets. They are involved in the fetal provision with amino acids, carbohydrates, lipids, vitamins and microelements. Targets of interest were clustered into a substrate-specific interaction network by using Search Tool for the Retrieval of Interacting Genes. The subsequent wet-lab validation was performed using quantitative RT-PCR on placentas from clinically well-characterized IUGR/PE patients (IUGR, n = 8; PE, n = 5; PE+IUGR, n = 10) and controls (term, n = 13; preterm, n = 7), followed by 2D-hierarchical heatmap generation. Statistical evaluation using Kruskal-Wallis tests was then applied to detect significantly different expression patterns, while scatter plot analysis indicated which transporters were predominantly influenced by IUGR or PE, or equally affected by both diseases. Identified by both methods, three overlapping targets, SLC7A7, SLC38A5 (amino acid transporters), and ABCA1 (cholesterol transporter), were further investigated at the protein level by western blotting. Protein analyses in total placental tissue lysates and membrane fractions isolated from disease and control placentas indicated an altered functional activity of those three nutrient transporters in IUGR/PE.

conclusionsCombining bioinformatic analysis, molecular biological experiments and mathematical diagramming, this study has demonstrated systematic alterations of nutrient transporter expressions in IUGR/PE. Among 46 initially targeted transporters, three significantly regulated genes were further investigated based on the severity and the disease specificity for IUGR and PE. Confirmed by mRNA and protein expression, the amino acid transporters SLC7A7 and SLC38A5 showed marked differences between controls and IUGR/PE and were regulated by both diseases. In contrast, ABCA1 may play an exclusive role in the development of PE.

Indexed as

AdultAmino Acid Transport Systems, NeutralAmino Acid Transport System y+LATP Binding Cassette Transporter 1Case-Control StudiesComputational BiologyFemaleFetal Growth RetardationFusion Regulatory Protein 1, Light ChainsGene Expression Regulation, DevelopmentalHumansInfant, NewbornPlacentaPre-EclampsiaPregnancyYoung AdultABCA1 protein, humanAmino Acid Transport Systems, NeutralAmino Acid Transport System y+LATP Binding Cassette Transporter 1Fusion Regulatory Protein 1, Light ChainsSLC38A5 protein, humanSLC7A7 protein, humanBioinformaticsIntrauterine growth restrictionMembrane transportersPlacentaPre-eclampsia

Identifiers

PMID29499643
PMCPMC5833046
OpenAlexW2803702463

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.