Evidence map›Paper›PMID 29499139›Full record

ArticleMolecular cell2018

CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9.

Gaurav Dugar, Ryan T Leenay, Sara K Eisenbart, Thorsten Bischler, Belinda U Aul, Chase L Beisel, Cynthia M Sharma

Abstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Bacterial small regulatory RNAs.Nature reviews. Microbiology · 2026
    Review
  3. Structural visualization of the molecular evolution of CRISPR-Cas9.Nature structural & molecular biology · 2026
    Article
  4. Article
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  6. Article
  7. Cas9 modulatesMicrobiology (Reading, England) · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Molecular model of a bacterial flagellar motorbioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Gaurav DugarInstitute of Molecular Infection Biology (IMIB)/Research Center for Infectious Diseases (ZINF), University of Würzburg, Josef-Schneider-Str. 2 / D15, D-97080 Würzburg, Germany.
Ryan T LeenayDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA.
Sara K EisenbartInstitute of Molecular Infection Biology (IMIB)/Research Center for Infectious Diseases (ZINF), University of Würzburg, Josef-Schneider-Str. 2 / D15, D-97080 Würzburg, Germany.
Thorsten BischlerInstitute of Molecular Infection Biology (IMIB)/Research Center for Infectious Diseases (ZINF), University of Würzburg, Josef-Schneider-Str. 2 / D15, D-97080 Würzburg, Germany.
Belinda U AulInstitute of Molecular Infection Biology (IMIB)/Research Center for Infectious Diseases (ZINF), University of Würzburg, Josef-Schneider-Str. 2 / D15, D-97080 Würzburg, Germany.
Chase L BeiselDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA; Helmholtz Institute for RNA-based Infection Research (HIRI), Josef-Schneider-Str. 2 / D15, D-97080 Würzburg, Germany. Electronic address: cbeisel@ncsu.edu.
Cynthia M SharmaInstitute of Molecular Infection Biology (IMIB)/Research Center for Infectious Diseases (ZINF), University of Würzburg, Josef-Schneider-Str. 2 / D15, D-97080 Würzburg, Germany. Electronic address: cynthia.sharma@uni-wuerzburg.de.

Funding

Molecular Biotechnology Training at North Carolina State UniversityT32GM008776 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI KELLY, ROBERT M · 2000 to 2019
$3.9M
Understanding and exploiting the functional diversity of CRISPR-Cas immune systemsR35GM119561 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BEISEL, CHASE LAWRENCE · 2016 to 2020
$1.9M
NIGMS NIH HHS R35 GM119561NIGMS NIH HHS T32 GM008776
6 · The paper itself

Abstract

Cas9 nucleases naturally utilize CRISPR RNAs (crRNAs) to silence foreign double-stranded DNA. While recent work has shown that some Cas9 nucleases can also target RNA, RNA recognition has required nuclease modifications or accessory factors. Here, we show that the Campylobacter jejuni Cas9 (CjCas9) can bind and cleave complementary endogenous mRNAs in a crRNA-dependent manner. Approximately 100 transcripts co-immunoprecipitated with CjCas9 and generally can be subdivided through their base-pairing potential to the four crRNAs. A subset of these RNAs was cleaved around or within the predicted binding site. Mutational analyses revealed that RNA binding was crRNA and tracrRNA dependent and that target RNA cleavage required the CjCas9 HNH domain. We further observed that RNA cleavage was PAM independent, improved with greater complementarity between the crRNA and the RNA target, and was programmable in vitro. These findings suggest that C. jejuni Cas9 is a promiscuous nuclease that can coordinately target both DNA and RNA.

Indexed as

Campylobacter jejuniCRISPR-Associated Protein 9CRISPR-Cas SystemsDNA, BacterialProtein DomainsRNA, BacterialRNA, MessengerRNA StabilityCRISPR-Associated Protein 9DNA, BacterialRNA, BacterialRNA, MessengerCampylobacter jejuniCas9CRISPRcrRNAgenome editingnon-coding RNApost-transcriptional regulationRIP-seqRNA binding proteinsRNA cleavage

Identifiers

PMID29499139
PMCPMC5859949

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.