Evidence map›Paper›PMID 29497141›Full record

ArticleJournal of human genetics2018

The somatic FAH C.1061C>A change counteracts the frequent FAH c.1062+5G>A mutation and permits U1snRNA-based splicing correction.

Daniela Scalet, Claudia Sacchetto, Francesco Bernardi, Mirko Pinotti, Stan F J van de Graaf, Dario Balestra

Open access · bronzeAbstract read
In one paragraph

Article in Journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Development of Engineered-U1 snRNA Therapies: Current Status.International journal of molecular sciences · 2023
    Review
  5. Counteracting the Common Shwachman-Diamond Syndrome-CausingInternational journal of molecular sciences · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Daniela ScaletDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Claudia SacchettoDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Francesco BernardiDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Mirko PinottiDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Stan F J van de GraafTytgat Institute for Liver and Intestinal Research, Amsterdam Gastroenterology and Metabolism, Academic Medical Center, Amsterdam, The Netherlands.
Dario BalestraDepartment of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy. blsdra@unife.it.
University of Ferrara · ITAcademic Medical Center · NL

Funding

Telethon GGP14190
6 · The paper itself

Abstract

In tyrosinaemia type 1(HT1), a mosaic pattern of fumarylacetoacetase (FAH) immunopositive or immunonegative nodules in liver tissue has been reported in many patients. This aspect is generally explained by a spontaneous reversion of the mutation into a normal genotype. In one HT1 patient carrying the frequent FAH c.1062+5G>A mutation, a second somatic change (c.1061C>A) has been reported in the same allele, and found in immunopositive nodules. Here, we demonstrated that the c.1062+5G>A prevents usage of the exon 12 5' splice site (ss), even when forced by an engineered U1snRNA specifically designed on the FAH 5'ss to strengthen its recognition. Noticeably the new somatic c.1061C>A change, in linkage with the c.1062+5G>A mutation, partially rescues the defective 5'ss and is associated to trace level (~5%) of correct transcripts. Interestingly, this combined genetic condition strongly favored the rescue by the engineered U1snRNA, with correct transcripts reaching up to 60%. Altogether, these findings elucidate the molecular basis of HT1 caused by the frequent FAH c.1062+5G>A mutation, and demonstrate the compensatory effect of the c.1061C>A change in promoting exon definition, thus unraveling a rare mechanism leading to FAH immune-reactive mosaicism.

Indexed as

AllelesGene FrequencyMutationRNA SplicingCell LineGenetic Complementation TestHumansHydrolasesRNA, Small NuclearTyrosinemiasfumarylacetoacetaseHydrolasesRNA, Small NuclearU1 small nuclear RNA

Identifiers

PMID29497141
PMCPMC5919117
OpenAlexW2800794875

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.