Evidence map›Paper›PMID 29496964›Full record

ArticleMolecular biology of the cell2018

Involvement in surface antigen expression by a moonlighting FG-repeat nucleoporin in trypanosomes.

Jennifer M Holden, Ludek Koreny, Samson Obado, Alexander V Ratushny, Wei-Ming Chen, Jean-Mathieu Bart, Miguel Navarro, Brian T Chait, John D Aitchison, Michael P Rout and 1 more

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Jennifer M HoldenSchool of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Ludek KorenySchool of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Samson ObadoThe Rockefeller University, New York, NY 10065.
Alexander V RatushnyCenter for Infectious Disease Research (formerly Seattle Biomed) and Institute for Systems Biology, Seattle, WA 98109-5234.
Wei-Ming ChenCenter for Infectious Disease Research (formerly Seattle Biomed) and Institute for Systems Biology, Seattle, WA 98109-5234.
Jean-Mathieu BartInstituto de Parasitología y Biomedicina "López-Neyra," Consejo Superior de Investigaciones Científicas, 18016 Armilla (Granada), Spain.
Miguel NavarroInstituto de Parasitología y Biomedicina "López-Neyra," Consejo Superior de Investigaciones Científicas, 18016 Armilla (Granada), Spain.
Brian T ChaitThe Rockefeller University, New York, NY 10065.
John D AitchisonCenter for Infectious Disease Research (formerly Seattle Biomed) and Institute for Systems Biology, Seattle, WA 98109-5234.
Michael P RoutThe Rockefeller University, New York, NY 10065.
Mark C FieldSchool of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Rockefeller University · USUniversity of Dundee · GBInstitute for Systems Biology · USCenter for Infectious Disease Research · USConsejo Superior de Investigaciones Científicas · ESInstituto de Parasitología y Biomedicina "López - Neyra" · ES

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DUDLEY, AIMEE M · 2006 to 2016
$30.6M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
New Tools for Exploring the Dynamic Interactome (Renewal)U54GM103511 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2012 to 2013
$6.2M
Nucleocytoplasmic transport: a target for cellular controlU01GM098256 · NIGMS · ROCKEFELLER UNIVERSITY · PI AITCHISON, JOHN D., ROUT, MICHAEL P · 2011 to 2014
$3.0M
The development of tools for proteomic analysis in trypanosomesR21AI096069 · NIAID · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2011 to 2012
$466k
Medical Research CouncilNIAID NIH HHS R21 AI096069NIGMS NIH HHS P41 GM103314NIGMS NIH HHS P41 GM109824NIGMS NIH HHS P50 GM076547NIGMS NIH HHS U01 GM098256NIGMS NIH HHS U54 GM103511Wellcome Trust 090007Wellcome Trust 203134/Z/16/Z
6 · The paper itself

Abstract

Components of the nuclear periphery coordinate a multitude of activities, including macromolecular transport, cell-cycle progression, and chromatin organization. Nuclear pore complexes (NPCs) mediate nucleocytoplasmic transport, mRNA processing, and transcriptional regulation, and NPC components can define regions of high transcriptional activity in some organisms at the nuclear periphery and nucleoplasm. Lineage-specific features underpin several core nuclear functions and in trypanosomatids, which branched very early from other eukaryotes, unique protein components constitute the lamina, kinetochores, and parts of the NPCs. Here we describe a phenylalanine-glycine (FG)-repeat nucleoporin, TbNup53b, that has dual localizations within the nucleoplasm and NPC. In addition to association with nucleoporins, TbNup53b interacts with a known trans-splicing component, TSR1, and has a role in controlling expression of surface proteins including the nucleolar periphery-located, procyclin genes. Significantly, while several nucleoporins are implicated in intranuclear transcriptional regulation in metazoa, TbNup53b appears orthologous to components of the yeast/human Nup49/Nup58 complex, for which no transcriptional functions are known. These data suggest that FG-Nups are frequently co-opted to transcriptional functions during evolution and extend the presence of FG-repeat nucleoporin control of gene expression to trypanosomes, suggesting that this is a widespread and ancient eukaryotic feature, as well as underscoring once more flexibility within nucleoporin function.

Indexed as

Active Transport, Cell NucleusAntigens, SurfaceCell NucleusConserved SequenceGlycineNuclear PoreNuclear Pore Complex ProteinsPhenylalanineProtein DomainsProtein Structural ElementsSequence AlignmentTrypanosomaTrypanosoma brucei bruceiAntigens, SurfaceGlycineNuclear Pore Complex ProteinsPhenylalanine

Identifiers

PMID29496964
PMCPMC5921576
OpenAlexW2793981434

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.