Evidence map›Paper›PMID 29496880›Full record

ArticleScience (New York, N.Y.)2018

Accurate computational design of multipass transmembrane proteins.

Peilong Lu, Duyoung Min, Frank DiMaio, Kathy Y Wei, Michael D Vahey, Scott E Boyken, Zibo Chen, Jorge A Fallas, George Ueda, William Sheffler and 4 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed.

  1. Article
  2. Review
  3. bioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. Review
  6. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Peilong LuDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0001-5894-9268
Duyoung MinDepartment of Chemistry and Biochemistry, UCLA-DOE Institute, Molecular Biology Institute, University of California, Los Angeles (UCLA), CA 90095, USA.ORCID 0000-0002-2856-8082
Frank DiMaioDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-7524-8938
Kathy Y WeiDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Michael D VaheyDepartment of Bioengineering and Biophysics Group, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0001-9453-4860
Scott E BoykenDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-5378-0632
Zibo ChenDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0003-2990-2895
Jorge A FallasDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
George UedaDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-9792-7149
William ShefflerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Vikram Khipple MulliganDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0001-6038-8922
Wenqing XuDepartment of Biological Structure, University of Washington, Seattle, WA 98195, USA.
James U BowieDepartment of Chemistry and Biochemistry, UCLA-DOE Institute, Molecular Biology Institute, University of California, Los Angeles (UCLA), CA 90095, USA.
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. dabaker@u.washington.edu.ORCID 0000-0001-7896-6217

Funding

Membrane Protein StabilityR01GM063919 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOWIE, JAMES U · 2001 to 2021
$5.6M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM063919
6 · The paper itself

Abstract

The computational design of transmembrane proteins with more than one membrane-spanning region remains a major challenge. We report the design of transmembrane monomers, homodimers, trimers, and tetramers with 76 to 215 residue subunits containing two to four membrane-spanning regions and up to 860 total residues that adopt the target oligomerization state in detergent solution. The designed proteins localize to the plasma membrane in bacteria and in mammalian cells, and magnetic tweezer unfolding experiments in the membrane indicate that they are very stable. Crystal structures of the designed dimer and tetramer-a rocket-shaped structure with a wide cytoplasmic base that funnels into eight transmembrane helices-are very close to the design models. Our results pave the way for the design of multispan membrane proteins with new functions.

Indexed as

BioengineeringComputer SimulationCrystallography, X-RayCytoplasmDetergentsHEK293 CellsHumansMembrane ProteinsModels, ChemicalProtein EngineeringProtein FoldingProtein MultimerizationProtein StabilityProtein Structure, SecondaryProtein UnfoldingDetergentsMembrane Proteins

Identifiers

PMID29496880
PMCPMC7328376

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.