Evidence map›Paper›PMID 29491469›Full record

ArticleNature communications2018

Heritable DNA methylation marks associated with susceptibility to breast cancer.

Jihoon E Joo, James G Dowty, Roger L Milne, Ee Ming Wong, Pierre-Antoine Dugué, Dallas English, John L Hopper, David E Goldgar, Graham G Giles, Melissa C Southey and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 6 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 6 syntheses or guidelines pooled it, 116 citations in OpenAlex.

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  10. Non-coding 886 (Epigenetics · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 20 institutions in 4 countries.

Jihoon E JooDepartment of Pathology, The University of Melbourne, Melbourne, VIC, 3010, Australia.
James G DowtyCentre for Epidemiology and Biostatistics, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Roger L MilneCentre for Epidemiology and Biostatistics, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID http://orcid.org/0000-0001-5764-7268
Ee Ming WongDepartment of Pathology, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Pierre-Antoine DuguéCentre for Epidemiology and Biostatistics, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Dallas EnglishCentre for Epidemiology and Biostatistics, The University of Melbourne, Melbourne, VIC, 3010, Australia.
John L HopperCentre for Epidemiology and Biostatistics, The University of Melbourne, Melbourne, VIC, 3010, Australia.
David E GoldgarDepartment of Pathology, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Graham G GilesCentre for Epidemiology and Biostatistics, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Melissa C SoutheyDepartment of Pathology, The University of Melbourne, Melbourne, VIC, 3010, Australia. msouthey@unimelb.edu.au.
kConFab
The Royal Melbourne Hospital · AUThe University of Melbourne · AUPeter MacCallum Cancer Centre · AUQIMR Berghofer Medical Research Institute · AUThe University of Queensland · AURoyal Children's Hospital · AURoyal Adelaide Hospital · AURoyal Prince Alfred Hospital · AUThe University of Sydney · AURoyal North Shore Hospital · AUWestmead Hospital · AUAustralian National University · AUMonash Medical Centre · AUSouth Australia Pathology · AUSt John of God Subiaco Hospital · AUUniversity of Auckland · NZCabrini Hospital · AUGarvan Institute of Medical Research · AUJohn Hunter Hospital · AUKing Edward Memorial Hospital · AU

Funding

Breast Cancer Family Registry CohortUM1CA164920 · NCI · CANCER PREVENTION INSTIT OF CALIFORNIA · PI ANDRULIS, IRENE, BUYS, SAUNDRA S · 2012 to 2017
$12.7M
NCI NIH HHS UM1 CA164920
6 · The paper itself

Abstract

Mendelian-like inheritance of germline DNA methylation in cancer susceptibility genes has been previously reported. We aimed to scan the genome for heritable methylation marks associated with breast cancer susceptibility by studying 25 Australian multiple-case breast cancer families. Here we report genome-wide DNA methylation measured in 210 peripheral blood DNA samples provided by family members using the Infinium HumanMethylation450. We develop and apply a new statistical method to identify heritable methylation marks based on complex segregation analysis. We estimate carrier probabilities for the 1000 most heritable methylation marks based on family structure, and we use Cox proportional hazards survival analysis to identify 24 methylation marks with corresponding carrier probabilities significantly associated with breast cancer. We replicate an association with breast cancer risk for four of the 24 marks using an independent nested case-control study. Here, we report a novel approach for identifying heritable DNA methylation marks associated with breast cancer risk.

Indexed as

DNA MethylationAustraliaBreast NeoplasmsCase-Control StudiesCohort StudiesCpG IslandsEpigenesis, GeneticFemaleGenetic Predisposition to DiseaseHumans

Identifiers

PMID29491469
PMCPMC5830448
OpenAlexW2793868488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.