Evidence map›Paper›PMID 29491457›Full record

ArticleScientific reports2018

Towards in cellulo virus crystallography.

Helen M E Duyvesteyn, Helen M Ginn, Maija K Pietilä, Armin Wagner, Johan Hattne, Jonathan M Grimes, Elina Hirvonen, Gwyndaf Evans, Marie-Laure Parsy, Nicholas K Sauter and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. A filamentous archaeal virus is enveloped inside the cell and released through pyramidal portals.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
  4. Review
  5. Improving signal strength in serial crystallography with DIALS geometry refinement.Acta crystallographica. Section D, Structural biology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Helen M E DuyvesteynDivision of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine Headington, Oxford, UK.
Helen M GinnDivision of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine Headington, Oxford, UK.
Maija K PietiläMolecular and Integrative Biosciences Research Program, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Armin WagnerDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID 0000-0001-8995-7324
Johan HattneMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA.ORCID 0000-0002-8936-0912
Jonathan M GrimesDivision of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine Headington, Oxford, UK.
Elina HirvonenMolecular and Integrative Biosciences Research Program, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Gwyndaf EvansDiamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.ORCID 0000-0002-6079-2201
Marie-Laure ParsyDivision of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine Headington, Oxford, UK.
Nicholas K SauterMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA.
Aaron S BrewsterMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA.
Juha T HuiskonenDivision of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine Headington, Oxford, UK.ORCID 0000-0002-0348-7323
David I StuartDivision of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine Headington, Oxford, UK. dave@strubi.ox.ac.uk.ORCID 0000-0002-3426-4210
Geoff SuttonDivision of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine Headington, Oxford, UK.
Dennis H BamfordMolecular and Integrative Biosciences Research Program, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland. dennis.bamford@helsinki.fi.

Funding

DIALS: New Computational Methods to Enable Challenging Crystallographic ExperimentsR01GM117126 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2016 to 2023
$6.1M
Towards real-time XFEL data reduction with CCTBXR01GM102520 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2012 to 2015
$1.4M
Medical Research Council G1000099Medical Research Council G1100525Medical Research Council MR/J007897/1Medical Research Council MR/L017709/1Medical Research Council MR/N00065X/1NIGMS NIH HHS R01 GM102520NIGMS NIH HHS R01 GM117126Wellcome TrustWellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

Viruses are a significant threat to both human health and the economy, and there is an urgent need for novel anti-viral drugs and vaccines. High-resolution viral structures inform our understanding of the virosphere, and inspire novel therapies. Here we present a method of obtaining such structural information that avoids potentially disruptive handling, by collecting diffraction data from intact infected cells. We identify a suitable combination of cell type and virus to accumulate particles in the cells, establish a suitable time point where most cells contain virus condensates and use electron microscopy to demonstrate that these are ordered crystalline arrays of empty capsids. We then use an X-ray free electron laser to provide extremely bright illumination of sub-micron intracellular condensates of bacteriophage phiX174 inside living Escherichia coli at room temperature. We have been able to collect low resolution diffraction data. Despite the limited resolution and completeness of these initial data, due to a far from optimal experimental setup, we have used novel methodology to determine a putative space group, unit cell dimensions, particle packing and likely maturation state of the particles.

Indexed as

Crystallography, X-RayBacteriophage phi X 174Cryoelectron MicroscopyEscherichia coli

Identifiers

PMID29491457
PMCPMC5830620

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.