Evidence map›Paper›PMID 29491418›Full record

ArticleNature communications2018

Two distinct domains contribute to the substrate acyl chain length selectivity of plant acyl-ACP thioesterase.

Fuyuan Jing, Le Zhao, Marna D Yandeau-Nelson, Basil J Nikolau

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Transcriptomic characterization of recombinantApplied and environmental microbiology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Divergent evolution of extreme production of variant plant monounsaturated fatty acids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Heterologous Expression ofInternational journal of molecular sciences · 2022
    Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Fuyuan JingDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Le ZhaoDepartment of Chemical and Biological Engineering, Iowa State University, Ames, IA, 50011, USA.
Marna D Yandeau-NelsonCenter for Biorenewable Chemicals, Iowa State University, Ames, IA, 50011, USA.
Basil J NikolauDepartment of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA, 50011, USA. dimmas@iastate.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The substrate specificity of acyl-ACP thioesterase (TE) plays an essential role in controlling the fatty acid profile produced by type II fatty acid synthases. Here we identify two groups of residues that synergistically determine different substrate specificities of two acyl-ACP TEs from Cuphea viscosissima (CvFatB1 and CvFatB2). One group (V194, V217, N223, R226, R227, and I268 in CvFatB2) is critical in determining the structure and depth of a hydrophobic cavity in the N-terminal hotdog domain that binds the substrate's acyl moiety. The other group (255-RKLSKI-260 and 285-RKLPKL-289 in CvFatB2) defines positively charged surface patches that may facilitate binding of the ACP moiety. Mutagenesis of residues within these two groups results in distinct synthetic acyl-ACP TEs that efficiently hydrolyze substrates with even shorter chains (C4- to C8-ACPs). These insights into structural determinants of acyl-ACP TE substrate specificity are useful in modifying this enzyme for tailored fatty acid production in engineered organisms.

Indexed as

Amino Acid SequenceCupheaFatty AcidsHydrophobic and Hydrophilic InteractionsMolecular Sequence DataPhylogenyPlant ProteinsPlantsProtein ConformationProtein DomainsSequence AlignmentSubstrate SpecificityThiolester HydrolasesFatty Acidsoleoyl-(acyl-carrier-protein) hydrolasePlant ProteinsThiolester Hydrolases

Identifiers

PMID29491418
PMCPMC5830452

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.