Evidence map›Paper›PMID 29491388›Full record

ArticleScientific reports2018

Development and Evaluation of Novel Statistical Methods in Urine Biomarker-Based Hepatocellular Carcinoma Screening.

Jeremy Wang, Surbhi Jain, Dion Chen, Wei Song, Chi-Tan Hu, Ying-Hsiu Su

Abstract readEvaluation Study
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Observational
  10. Liquid biopsies for hepatocellular carcinoma.Translational research : the journal of laboratory and clinical medicine · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jeremy WangJBS Science, Inc., Doylestown, Pennsylvania, United States.
Surbhi JainJBS Science, Inc., Doylestown, Pennsylvania, United States.
Dion ChenClinPharma Consulting, Inc, Phoenixville, Pennsylvania, United States.
Wei SongJBS Science, Inc., Doylestown, Pennsylvania, United States.
Chi-Tan HuBuddhist Tzu Chi General Hospital and Tzu Chi University, Hualien, 970, Taiwan R.O.C.. chitan.hu@msa.hinet.com.
Ying-Hsiu SuJBS Science, Inc., Doylestown, Pennsylvania, United States. Ying-hsiu.Su@bblumberg.org.

Funding

Development of a Urine Test for the Early Detection of Liver CancerR44CA165312 · NCI · JBS SCIENCE, INC. · PI LIN, SELENA · 2013 to 2020
$4.9M
Development of cell-free DNA assays for HCC screening and liquid biopsyR01CA202769 · NCI · BARUCH S. BLUMBERG INSTITUTE · PI SU, YING-HSIU · 2016 to 2020
$2.1M
NCI NIH HHS R01 CA202769NCI NIH HHS R44 CA165312
6 · The paper itself

Abstract

Hepatocellular carcinoma is one of the fastest growing cancers in the US and has a low survival rate, partly due to difficulties in early detection. Because of HCC's high heterogeneity, it has been suggested that multiple biomarkers would be needed to develop a sensitive HCC screening test. This study applied random forest (RF), a machine learning technique, and proposed two novel models, fixed sequential (FS) and two-step (TS), for comparison with two commonly used statistical techniques, logistic regression (LR) and classification and regression trees (CART), in combining multiple urine DNA biomarkers for HCC screening using biomarker values obtained from 137 HCC and 431 non-HCC (224 hepatitis and 207 cirrhosis) subjects. The sensitivity, specificity, area under the receiver operating curve, and variability were estimated through repeated 10-fold cross-validation to compare the models' performances in accuracy and robustness. We show that RF and TS have higher accuracy and stability; specifically, they reach 90% specificity and 86%/87% sensitivity respectively along with 15% higher sensitivity and 10% higher specificity than LR in cross-validation. The potential of RF and TS to develop a panel of multiple biomarkers and the possibility for self-training, cloud-based models for HCC screening are discussed.

Indexed as

AdultAgedAged, 80 and overArea Under CurveBiomarkers, TumorBiometryCarcinoma, HepatocellularFemaleHumansLiver NeoplasmsMachine LearningMaleMass ScreeningMiddle AgedMultivariate AnalysisRegression AnalysisBiomarkers, Tumor

Identifiers

PMID29491388
PMCPMC5830457

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.