Evidence map›Paper›PMID 29491361›Full record

ArticleNature communications2018

Aggregating sequences that occur in many proteins constitute weak spots of bacterial proteostasis.

Ladan Khodaparast, Laleh Khodaparast, Rodrigo Gallardo, Nikolaos N Louros, Emiel Michiels, Reshmi Ramakrishnan, Meine Ramakers, Filip Claes, Lydia Young, Mohammad Shahrooei and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Review
  2. β-Amyloid (Aβ) and Human Cathelicidin LL-37: Two Sides of the Same Coin?International journal of molecular sciences · 2026
    Review
  3. Reverse-engineering amyloid strains with generative protein design.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Proteostasis-targeted antibacterial strategies.Journal of microbiology (Seoul, Korea) · 2026
    Review
  6. Review
  7. ClpB enhances thermotolerance inMicrobiology spectrum · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Mechanisms and pathology of protein misfolding and aggregation.Nature reviews. Molecular cell biology · 2023
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Ladan KhodaparastLaboratory of Clinical Bacteriology and Mycology, Department of Microbiology and Immunology, KULeuven, Herestraat 49, 3000, Leuven, Belgium.
Laleh KhodaparastLaboratory of Clinical Bacteriology and Mycology, Department of Microbiology and Immunology, KULeuven, Herestraat 49, 3000, Leuven, Belgium.
Rodrigo GallardoSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Nikolaos N LourosSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Emiel MichielsSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Reshmi RamakrishnanSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Meine RamakersSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Filip ClaesSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Lydia YoungAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK.
Mohammad ShahrooeiLaboratory of Clinical Bacteriology and Mycology, Department of Microbiology and Immunology, KULeuven, Herestraat 49, 3000, Leuven, Belgium.
Hannah WilkinsonSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Matyas DesagerSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium.
Wubishet Mengistu TadesseLaboratory of Food Microbiology, Department of Microbial and Molecular Systems (M²S), KULeuven, Kasteelpark Arenberg 22, 3001, Leuven, Belgium.
K Peter R NilssonDepartment of Physics, Chemistry and Biology, Linköping University, SE-581 83, Linköping, Sweden.
Per HammarströmDepartment of Physics, Chemistry and Biology, Linköping University, SE-581 83, Linköping, Sweden.
Abram AertsenLaboratory of Food Microbiology, Department of Microbial and Molecular Systems (M²S), KULeuven, Kasteelpark Arenberg 22, 3001, Leuven, Belgium.
Sebastien CarpentierSystems Biology based Mass Spectrometry Laboratory (SyBioMa), KULeuven, Herestraat 49, 3000, Leuven, Belgium.
Johan Van EldereLaboratory of Clinical Bacteriology and Mycology, Department of Microbiology and Immunology, KULeuven, Herestraat 49, 3000, Leuven, Belgium. johan.vaneldere@uzleuven.be.
Frederic RousseauSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium. frederic.rousseau@switch.vib-kuleuven.be.
Joost SchymkowitzSwitch Laboratory, VIB Center for Brain and Disease Research, Herestraat 49, 3000, Leuven, Belgium. joost.schymkowitz@switch.vib-kuleuven.be.ORCID http://orcid.org/0000-0003-2020-0168

Funding

European Research Council 647458
6 · The paper itself

Abstract

Aggregation is a sequence-specific process, nucleated by short aggregation-prone regions (APRs) that can be exploited to induce aggregation of proteins containing the same APR. Here, we find that most APRs are unique within a proteome, but that a small minority of APRs occur in many proteins. When aggregation is nucleated in bacteria by such frequently occurring APRs, it leads to massive and lethal inclusion body formation containing a large number of proteins. Buildup of bacterial resistance against these peptides is slow. In addition, the approach is effective against drug-resistant clinical isolates of Escherichia coli and Acinetobacter baumannii, reducing bacterial load in a murine bladder infection model. Our results indicate that redundant APRs are weak points of bacterial protein homeostasis and that targeting these may be an attractive antibacterial strategy.

Indexed as

ProteostasisAcinetobacter baumanniiBacterial ProteinsEscherichia coliProtein AggregatesProtein FoldingProteomeBacterial ProteinsProtein AggregatesProteome

Identifiers

PMID29491361
PMCPMC5830399

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.