Evidence map›Paper›PMID 29489753›Full record

ArticleNature2018

Environment dominates over host genetics in shaping human gut microbiota.

Daphna Rothschild, Omer Weissbrod, Elad Barkan, Alexander Kurilshikov, Tal Korem, David Zeevi, Paul I Costea, Anastasia Godneva, Iris N Kalka, Noam Bar and 19 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,550 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,550citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,550 citing papers in PubMed, 6 syntheses or guidelines pooled it.

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  5. Probiotic Supplementation and Bone Health Parameters in Adults: A Systematic Review and Meta-Analysis.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2026
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1,490 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors.

Daphna RothschildDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Omer WeissbrodDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Elad BarkanDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Alexander KurilshikovUniversity of Groningen, University Medical Center Groningen, Department of Genetics, 9713 GZ Groningen, The Netherlands.
Tal KoremDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
David ZeeviDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Paul I CosteaDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Anastasia GodnevaDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Iris N KalkaDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Noam BarDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Smadar ShiloDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Dar LadorDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Arnau Vich VilaUniversity of Groningen, University Medical Center Groningen, Department of Genetics, 9713 GZ Groningen, The Netherlands.
Niv ZmoraImmunology Department, Weizmann Institute of Science, Rehovot 7610001, Israel.
Meirav Pevsner-FischerImmunology Department, Weizmann Institute of Science, Rehovot 7610001, Israel.
David IsraeliDay Care Unit and the Laboratory of Imaging and Brain Stimulation, Kfar Shaul Hospital, Jerusalem Center for Mental Health, Jerusalem 9106000, Israel.
Noa KosowerDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Gal MalkaDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Bat Chen WolfDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Tali Avnit-SagiDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Maya Lotan-PompanDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Adina WeinbergerDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Zamir HalpernResearch Center for Digestive Tract and Liver Diseases, Tel Aviv Sourasky Medical Center, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 6423906, Israel.
Shai CarmiBraun School of Public Health and Community Medicine, The Hebrew University of Jerusalem, Jerusalem 9112001, Israel.
Jingyuan FuUniversity of Groningen, University Medical Center Groningen, Department of Genetics, 9713 GZ Groningen, The Netherlands.
Cisca WijmengaUniversity of Groningen, University Medical Center Groningen, Department of Genetics, 9713 GZ Groningen, The Netherlands.
Alexandra ZhernakovaUniversity of Groningen, University Medical Center Groningen, Department of Genetics, 9713 GZ Groningen, The Netherlands.
Eran ElinavImmunology Department, Weizmann Institute of Science, Rehovot 7610001, Israel.
Eran SegalDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 7610001, Israel.

Funding

Howard Hughes Medical InstituteWellcome Trust
6 · The paper itself

Abstract

Human gut microbiome composition is shaped by multiple factors but the relative contribution of host genetics remains elusive. Here we examine genotype and microbiome data from 1,046 healthy individuals with several distinct ancestral origins who share a relatively common environment, and demonstrate that the gut microbiome is not significantly associated with genetic ancestry, and that host genetics have a minor role in determining microbiome composition. We show that, by contrast, there are significant similarities in the compositions of the microbiomes of genetically unrelated individuals who share a household, and that over 20% of the inter-person microbiome variability is associated with factors related to diet, drugs and anthropometric measurements. We further demonstrate that microbiome data significantly improve the prediction accuracy for many human traits, such as glucose and obesity measures, compared to models that use only host genetic and environmental data. These results suggest that microbiome alterations aimed at improving clinical outcomes may be carried out across diverse genetic backgrounds.

Indexed as

EnvironmentFamily CharacteristicsLife StyleAdolescentAdultAgedAged, 80 and overCohort StudiesDietFemaleGastrointestinal MicrobiomeGene-Environment InteractionGlucoseHealthy VolunteersHeredityHumansGlucoseRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID29489753

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.