Evidence map›Paper›PMID 29487372›Full record

ArticleScientific reports2018

Evaluation of Polygenic Determinants of Non-Alcoholic Fatty Liver Disease (NAFLD) By a Candidate Genes Resequencing Strategy.

Alessia Di Costanzo, Francesca Belardinilli, Diego Bailetti, Marialuisa Sponziello, Laura D'Erasmo, Licia Polimeni, Francesco Baratta, Daniele Pastori, Fabrizio Ceci, Anna Montali and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 4 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 4 syntheses or guidelines pooled it, 80 citations in OpenAlex.

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  5. Long-term hepatic safety of lomitapide in homozygous familial hypercholesterolaemia.Liver international : official journal of the International Association for the Study of the Liver · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Alessia Di CostanzoDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy. alessia.dicostanzo@uniroma1.it.ORCID 0000-0001-8359-6599
Francesca BelardinilliMolecular Medicine, "Sapienza" University, Rome, Italy.
Diego BailettiExperimental Medicine, "Sapienza" University, Rome, Italy.
Marialuisa SponzielloDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.
Laura D'ErasmoDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.ORCID 0000-0002-9174-4667
Licia PolimeniDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.
Francesco BarattaDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.
Daniele PastoriDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.ORCID 0000-0001-6357-5213
Fabrizio CeciCellular Biotechnologies and Hematology, "Sapienza" University, Rome, Italy.ORCID 0000-0003-4051-4922
Anna MontaliDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.
Gabriella GirelliImmunohematology and Transfusion Medicine Unit, "Sapienza" University, Rome, Italy.
Bruna De MasiImmunohematology and Transfusion Medicine Unit, "Sapienza" University, Rome, Italy.
Antonio AngeloniMolecular Medicine, "Sapienza" University, Rome, Italy.
Giuseppe GianniniMolecular Medicine, "Sapienza" University, Rome, Italy.
Maria Del BenDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.
Francesco AngelicoPublic Health and Infectious Diseases, "Sapienza" University, Rome, Italy.
Marcello ArcaDepartments of Internal Medicine and Medical Specialties, "Sapienza" University, Rome, Italy.
Sapienza University of Rome · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NAFLD is a polygenic condition but the individual and cumulative contribution of identified genes remains to be established. To get additional insight into the genetic architecture of NAFLD, GWAS-identified GCKR, PPP1R3B, NCAN, LYPLAL1 and TM6SF2 genes were resequenced by next generation sequencing in a cohort of 218 NAFLD subjects and 227 controls, where PNPLA3 rs738409 and MBOAT7 rs641738 genotypes were also obtained. A total of 168 sequence variants were detected and 47 were annotated as functional. When all functional variants within each gene were considered, only those in TM6SF2 accumulate in NAFLD subjects compared to controls (P = 0.04). Among individual variants, rs1260326 in GCKR and rs641738 in MBOAT7 (recessive), rs58542926 in TM6SF2 and rs738409 in PNPLA3 (dominant) emerged as associated to NAFLD, with PNPLA3 rs738409 being the strongest predictor (OR 3.12, 95% CI, 1.8-5.5, P < 0.001). A 4-SNPs weighted genetic risk score value >0.28 was associated with a 3-fold increased risk of NAFLD. Interestingly, rs61756425 in PPP1R3B and rs641738 in MBOAT7 genes were predictors of NAFLD severity. Overall, TM6SF2, GCKR, PNPLA3 and MBOAT7 were confirmed to be associated with NAFLD and a score based on these genes was highly predictive of this condition. In addition, PPP1R3B and MBOAT7 might influence NAFLD severity.

Indexed as

AcyltransferasesAdaptor Proteins, Signal TransducingAllelesChondroitin Sulfate ProteoglycansFemaleGenetic Association StudiesGenetic Predisposition to DiseaseGenotypeHigh-Throughput Nucleotide SequencingHumansLectins, C-TypeLipaseLysophospholipaseMaleMembrane ProteinsMiddle AgedAcyltransferasesAdaptor Proteins, Signal TransducingChondroitin Sulfate ProteoglycansGCKR protein, humanLectins, C-TypeLipaseLYPLAL1 protein, humanLysophospholipaseMembrane ProteinsNCAN protein, humanNerve Tissue ProteinsNeurocanPhospholipases A2, Calcium-IndependentPNPLA3 protein, humanPPP1R3B protein, humanProtein Phosphatase 1TM6SF2 protein, human

Identifiers

PMID29487372
PMCPMC5829219
OpenAlexW2806683223

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.