Evidence map›Paper›PMID 29487281›Full record

ArticleNature communications2018

Tailed giant Tupanvirus possesses the most complete translational apparatus of the known virosphere.

Jônatas Abrahão, Lorena Silva, Ludmila Santos Silva, Jacques Yaacoub Bou Khalil, Rodrigo Rodrigues, Thalita Arantes, Felipe Assis, Paulo Boratto, Miguel Andrade, Erna Geessien Kroon and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 171 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
171citing papers in PubMed, 1 pooled it
28.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

171 citing papers in PubMed, 1 synthesis or guideline pooled it, 277 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Why did some viruses evolve to be giants while others did not?Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. tRNA modifications in viral replication.The Journal of biological chemistry · 2026
    Review
  9. Article
  10. The selfish ribosome.PLoS biology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

111 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 3 countries.

Jônatas AbrahãoMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Lorena SilvaMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Ludmila Santos SilvaMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Jacques Yaacoub Bou KhalilCNRS, 13005, Marseille, France.
Rodrigo RodriguesLaboratório de Vírus, Instituto de Ciências Biológicas, Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brazil.
Thalita ArantesLaboratório de Vírus, Instituto de Ciências Biológicas, Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brazil.
Felipe AssisLaboratório de Vírus, Instituto de Ciências Biológicas, Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brazil.
Paulo BorattoLaboratório de Vírus, Instituto de Ciências Biológicas, Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brazil.
Miguel AndradeLaboratório de Microscopia Eletrônica e Virologia, Departamento de Biologia Celular, Instituto de Ciências Biológicas, Universidade de Brasília, Asa Norte, Brasília, 70910-900, Brazil.
Erna Geessien KroonLaboratório de Vírus, Instituto de Ciências Biológicas, Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brazil.
Bergmann RibeiroLaboratório de Microscopia Eletrônica e Virologia, Departamento de Biologia Celular, Instituto de Ciências Biológicas, Universidade de Brasília, Asa Norte, Brasília, 70910-900, Brazil.ORCID http://orcid.org/0000-0002-1061-196X
Ivan BergierLab. Biomass Conversion, Embrapa Pantanal, R. 21 de Setembro 1880, 79320-900, Corumbá/MS, Brazil.ORCID http://orcid.org/0000-0002-1076-8617
Herve SeligmannMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Eric GhigoMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Philippe ColsonMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Anthony LevasseurMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Guido KroemerCell Biology and Metabolomics Platforms, Gustave Roussy Cancer Campus, Villejuif, 94805, France.
Didier RaoultMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France. didier.raoult@gmail.com.
Bernard La ScolaMEPHI, APHM, IRD 198, Aix Marseille Univ, IHU-Méditerranee Infection, 19-21 Bd Jean Moulin, 13005, Marseille, France. bernard.la-scola@univ-amu.fr.
Universidade Federal de Minas Gerais · BRMéditerranée Infection Foundation · FRUniversidade de Brasília · BRBrazilian Agricultural Research Corporation · BRCentre National de la Recherche Scientifique · FRDélégation Paris 5 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we report the discovery of two Tupanvirus strains, the longest tailed Mimiviridae members isolated in amoebae. Their genomes are 1.44-1.51 Mb linear double-strand DNA coding for 1276-1425 predicted proteins. Tupanviruses share the same ancestors with mimivirus lineages and these giant viruses present the largest translational apparatus within the known virosphere, with up to 70 tRNA, 20 aaRS, 11 factors for all translation steps, and factors related to tRNA/mRNA maturation and ribosome protein modification. Moreover, two sequences with significant similarity to intronic regions of 18 S rRNA genes are encoded by the tupanviruses and highly expressed. In this translation-associated gene set, only the ribosome is lacking. At high multiplicity of infections, tupanvirus is also cytotoxic and causes a severe shutdown of ribosomal RNA and a progressive degradation of the nucleus in host and non-host cells. The analysis of tupanviruses constitutes a new step toward understanding the evolution of giant viruses.

Indexed as

AmoebaBrazilEvolution, MolecularGenome, ViralHost-Pathogen InteractionsHost SpecificityLakesMicroscopy, ElectronMimiviridaeOceans and SeasPhylogenyProtein BiosynthesisProteomeRNA, Ribosomal, 16SRNA, ViralViral ProteinsProteomeRNA, Ribosomal, 16SRNA, ViralViral Proteins

Identifiers

PMID29487281
PMCPMC5829246
OpenAlexW2793791227

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.