Evidence map›Paper›PMID 29487256›Full record

ArticleLung India : official organ of Indian Chest Society

Pyrosequencing to resolve discrepant Xpert MTB/RIF and Mycobacterial Growth Indicator Tube 960.

Kanchan Ajbani, Mubin Kazi, Jeffrey Tornheim, Swapna Naik, Rajeev Soman, Anjali Shetty, Camilla Rodrigues

Open access · diamondAbstract readCase Reports
In one paragraph

Article in Lung India : official organ of Indian Chest Society. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Mutations inInternational journal of microbiology · 2020
    Article
  5. Tuberculosis of the Spinal Cord.Annals of Indian Academy of Neurology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Kanchan AjbaniDepartment of Microbiology, P. D. Hinduja Hospital and Medical Research Centre, Mumbai, Maharashtra, India.
Mubin KaziDepartment of Microbiology, P. D. Hinduja Hospital and Medical Research Centre, Mumbai, Maharashtra, India.
Jeffrey TornheimJohns Hopkins University School of Medicine, Division of Infectious Diseases, Center for Clinical Global Health Education, Baltimore, MD, USA.
Swapna NaikDepartment of Microbiology, P. D. Hinduja Hospital and Medical Research Centre, Mumbai, Maharashtra, India.
Rajeev SomanDepartment of Medicine, P. D. Hinduja Hospital and Medical Research Centre, Mumbai, Maharashtra, India.
Anjali ShettyDepartment of Microbiology, P. D. Hinduja Hospital and Medical Research Centre, Mumbai, Maharashtra, India.
Camilla RodriguesDepartment of Microbiology, P. D. Hinduja Hospital and Medical Research Centre, Mumbai, Maharashtra, India.
Johns Hopkins University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Delayed diagnosis of drug resistance has been a major obstacle to proper management and control of drug-resistant tuberculosis (TB). Expanded access to rapid molecular diagnostics such as Xpert MTB/RIF has been helpful, but has generated confusion about how to interpret genotype-phenotype discordance. Optimal management is not clearly defined for patients with rifampin resistance by Xpert MTB/RIF but rifampin susceptibility by phenotypic testing. To resolve this discrepancy, we performed pyrosequencing of discordant isolates identified at a reference laboratory over a 6-month period. We present here strategies to address genotype-phenotype discordance using sequencing.

Indexed as

CulturediscrepancypyrosequencingXpert

Identifiers

PMID29487256
PMCPMC5846270
OpenAlexW2804356000

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.