Evidence map›Paper›PMID 29487113›Full record

ArticleMolecular & cellular proteomics : MCP2018

Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline.

Vagisha Sharma, Josh Eckels, Birgit Schilling, Christina Ludwig, Jacob D Jaffe, Michael J MacCoss, Brendan MacLean

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 161 papers.

0numbers the graph read from it
0cells of the map it votes in
161citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

161 citing papers in PubMed.

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  7. Dear-OMG: An Omics-General Compression Method for Genomics, Proteomics and Metabolomics Data.Interdisciplinary sciences, computational life sciences · 2026
    Article
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101 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Vagisha SharmaFrom the ‡University of Washington, Seattle, Washington 98195.
Josh Eckels§LabKey, San Diego, California 92101.
Birgit Schilling¶Buck Institute for Research on Aging, Novato, California 94945.
Christina Ludwig‖Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Freising, Germany.
Jacob D Jaffe**The Broad Institute, Cambridge, Massachusetts 02142.
Michael J MacCossFrom the ‡University of Washington, Seattle, Washington 98195.
Brendan MacLeanFrom the ‡University of Washington, Seattle, Washington 98195; brendanx@uw.edu.

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
There and Back Again: Epigenetic Reinforcement of Cellular Signaling States - OverallU54HG008097 · NHGRI · BROAD INSTITUTE, INC. · PI JAFFE, JACOB DAVID · 2014 to 2019
$9.3M
Skyline Targeted Proteomics EnvironmentR01GM103551 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2020
$3.4M
Molecular pathogenesis of skeletal muscle atrophyR01AR071762 · NIAMS · UNIVERSITY OF IOWA · PI ADAMS, CHRISTOPHER M · 2017 to 2021
$2.4M
The Chorus Project: A Sustainable Cloud Solution for Mass Spectrometry DataR01GM121696 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2017 to 2020
$1.2M
NHGRI NIH HHS U54 HG008097NIAMS NIH HHS R01 AR071762NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM103551NIGMS NIH HHS R01 GM121696
6 · The paper itself

Abstract

To address the growing need for a centralized, community resource of published results processed with Skyline, and to provide reviewers and readers immediate visual access to the data behind published conclusions, we present Panorama Public (https://panoramaweb.org/public.url), a repository of Skyline documents supporting published results. Panorama Public is built on Panorama, an open source data management system for mass spectrometry data processed with the Skyline targeted mass spectrometry environment. The Panorama web application facilitates viewing, sharing, and disseminating results contained in Skyline documents via a web-browser. Skyline users can easily upload their documents to a Panorama server and allow other researchers to explore uploaded results in the Panorama web-interface through a variety of familiar summary graphs as well as annotated views of the chromatographic peaks processed with Skyline. This makes Panorama ideal for sharing targeted, quantitative results contained in Skyline documents with collaborators, reviewers, and the larger proteomics community. The Panorama Public repository employs the full data visualization capabilities of Panorama which facilitates sharing results with reviewers during manuscript review.

Indexed as

Databases, ProteinProteomicsSoftwareMass SpectrometryWeb BrowserBioinformatics softwaredata repositoryguidelinesMass SpectrometryMultiple reaction monitoringpanoramaParallel reaction monitoringQuantificationskylinesoftwareTargeted mass spectrometry

Identifiers

PMID29487113
PMCPMC5986241

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.