Evidence map›Paper›PMID 29486732›Full record

ArticleBMC genetics2018

Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle.

Paula Nicolini, Rocío Amorín, Yi Han, Francisco Peñagaricano

Open access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. A major QTL region associated with powdery mildew resistance in leaves and fruits of the reconstructed garden strawberry.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  6. Adenylate kinase 9 is essential for sperm function and male fertility in mammals.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  11. Review
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  13. Article
  14. Selection for bull fertility: a review.Translational animal science · 2020
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Paula NicoliniDepartment of Animal Sciences, University of Florida, 2250 Shealy Drive, Gainesville, FL, 32611, USA.
Rocío AmorínDepartment of Animal Sciences, University of Florida, 2250 Shealy Drive, Gainesville, FL, 32611, USA.
Yi HanDepartment of Animal Sciences, University of Florida, 2250 Shealy Drive, Gainesville, FL, 32611, USA.
Francisco PeñagaricanoDepartment of Animal Sciences, University of Florida, 2250 Shealy Drive, Gainesville, FL, 32611, USA. fpenagaricano@ufl.edu.ORCID 0000-0001-6661-3991
University of Florida · USUniversidad de la República de Uruguay · UY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundService sire has a considerable impact on reproductive success in dairy cattle. Most gene mapping studies for bull fertility have focused on additive effects, while non-additive effects have been largely ignored. The main goal of this study was to assess the relevance of non-additive effects on Sire Conception Rate (SCR) in Holstein dairy cattle. The analysis included 7.5 k Holstein bulls with both SCR records and 57.8 k single nucleotide polymorphism (SNP) markers spanning the entire genome.

resultsThe importance of non-additive effects was evaluated using an efficient two-step mixed model-based approach. Four genomic regions located on chromosomes BTA8, BTA9, BTA13 and BTA17 showed marked dominance and/or recessive effects. Most of these regions harbor genes, such as ADAM28, DNAJA1, TBC1D20, SPO11, PIWIL3 and TMEM119, that are directly implicated in testis development, male germ line maintenance, and sperm maturation.

conclusionsThis study provides further evidence for the relevance of non-additive effects in fitness-related traits, such as male fertility. In addition, these findings may point out new strategies for improving service sire fertility in dairy cattle via marker-assisted selection.

Indexed as

Genes, DominantADAM ProteinsAnimalsArgonaute ProteinsCattleEndodeoxyribonucleasesFertilityFertilizationGenes, RecessiveGenome-Wide Association StudyGerm CellsHSP40 Heat-Shock ProteinsMaleMeiotic Recombination Protein SPO11Polymorphism, Single Nucleotiderab1 GTP-Binding ProteinsADAM ProteinsArgonaute ProteinsEndodeoxyribonucleasesHSP40 Heat-Shock ProteinsMeiotic Recombination Protein SPO11rab1 GTP-Binding ProteinsBovine spermDairy bull fertilityDominance effectGenome-wide study

Identifiers

PMID29486732
PMCPMC5830072
OpenAlexW2793827201

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.