Evidence map›Paper›PMID 29483575›Full record

ArticleNature communications2018

Self-interaction of NPM1 modulates multiple mechanisms of liquid-liquid phase separation.

Diana M Mitrea, Jaclyn A Cika, Christopher B Stanley, Amanda Nourse, Paulo L Onuchic, Priya R Banerjee, Aaron H Phillips, Cheon-Gil Park, Ashok A Deniz, Richard W Kriwacki

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 239 papers.

0numbers the graph read from it
0cells of the map it votes in
239citing papers in PubMed
16.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

239 citing papers in PubMed, 441 citations in OpenAlex.

  1. Tyrosine phosphorylation unfolds nucleophosmin and disrupts its integration into the nucleolus.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  7. Generative design of intrinsically disordered protein regions with IDiom.bioRxiv : the preprint server for biology · 2026
    Article
  8. Investigating Phase Separation in Genome Folding via Multiscale Computational Modeling.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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179 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Diana M MitreaDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Jaclyn A CikaDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Christopher B StanleyBiology and Biomedical Sciences Group, Biology and Soft Matter Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA.ORCID http://orcid.org/0000-0002-4226-7710
Amanda NourseDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Paulo L OnuchicDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Priya R BanerjeeDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0002-6169-1461
Aaron H PhillipsDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Cheon-Gil ParkDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Ashok A DenizDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Richard W KriwackiDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA. richard.kriwacki@stjude.org.ORCID http://orcid.org/0000-0002-9798-6018
St. Jude Children's Research Hospital · USScripps Research Institute · USOak Ridge National Laboratory · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Single Molecule Studies of Protein Folding MechanismsR01GM066833 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DENIZ, ASHOK A · 2003 to 2017
$5.2M
The Molecular Basis of Liquid-like Structure of the NucleolusR01GM115634 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI KRIWACKI, RICHARD W · 2015 to 2018
$1.8M
NCI NIH HHS P30 CA021765NIGMS NIH HHS R01 GM066833NIGMS NIH HHS R01 GM115634
6 · The paper itself

Abstract

Nucleophosmin (NPM1) is an abundant, oligomeric protein in the granular component of the nucleolus with roles in ribosome biogenesis. Pentameric NPM1 undergoes liquid-liquid phase separation (LLPS) via heterotypic interactions with nucleolar components, including ribosomal RNA (rRNA) and proteins which display multivalent arginine-rich linear motifs (R-motifs), and is integral to the liquid-like nucleolar matrix. Here we show that NPM1 can also undergo LLPS via homotypic interactions between its polyampholytic intrinsically disordered regions, a mechanism that opposes LLPS via heterotypic interactions. Using a combination of biophysical techniques, including confocal microscopy, SAXS, analytical ultracentrifugation, and single-molecule fluorescence, we describe how conformational changes within NPM1 control valency and switching between the different LLPS mechanisms. We propose that this newly discovered interplay between multiple LLPS mechanisms may influence the direction of vectorial pre-ribosomal particle assembly within, and exit from the nucleolus as part of the ribosome biogenesis process.

Indexed as

Binding SitesCell NucleolusCloning, MolecularEscherichia coliGene ExpressionGenetic VectorsHumansIntrinsically Disordered ProteinsKineticsModels, MolecularMutationNuclear ProteinsNucleophosminOrganelle BiogenesisPhase TransitionProtein BindingIntrinsically Disordered ProteinsNPM1 protein, humanNuclear ProteinsNucleophosminRecombinant ProteinsSURF6 protein, human

Identifiers

PMID29483575
PMCPMC5827731
OpenAlexW2790446628

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.