Evidence map›Paper›PMID 29483542›Full record

ArticleScientific reports2018

Understanding the high L-valine production in Corynebacterium glutamicum VWB-1 using transcriptomics and proteomics.

Hailing Zhang, Yanyan Li, Chenhui Wang, Xiaoyuan Wang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Genomics Characterization of an EngineeredFrontiers in bioengineering and biotechnology · 2021
    Article
  9. Article
  10. Recent Advances of L-ornithine Biosynthesis in Metabolically EngineeredFrontiers in bioengineering and biotechnology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Hailing ZhangState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, China.
Yanyan LiState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, China.
Chenhui WangState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, China.
Xiaoyuan WangState Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122, China. xwang@jiangnan.edu.cn.
Jiangnan University · CNState Key Laboratory of Food Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Toward the elucidation of the advanced mechanism of L-valine production by Corynebacterium glutamicum, a highly developed industrial strain VWB-1 was analyzed, employing the combination of transcriptomics and proteomics methods. The transcriptional level of 1155 genes and expression abundance of 96 proteins were changed significantly by the transcriptome and proteome comparison of VWB-1 and ATCC 13869. It was indicated that the key genes involved in the biosynthesis of L-valine, ilvBN, ilvC, ilvD, ilvE were up-regulated in VWB-1, which together made prominent contributions in improving the carbon flow towards L-valine. The L-leucine and L-isoleucine synthesis ability were weakened according to the down-regulation of leuB and ilvA. The up-regulation of the branched chain amino acid transporter genes brnFE promoted the L-valine secretion capability of VWB-1. The NADPH and ATP generation ability of VWB-1 were strengthened through the up-regulation of the genes involved in phosphate pentose pathway and TCA pathway. Pyruvate accumulation was achieved through the weakening of the L-lactate, acetate and L-alanine pathways. The up-regulation of the genes coding for elongation factors and ribosomal proteins were beneficial for L-valine synthesis in C. glutamicum. All information acquired were useful for the genome breeding of better industrial L-valine producing strains.

Indexed as

AlanineCorynebacterium glutamicumLeucineNADPProteomicsPyruvic AcidTranscriptomeValineAlanineLeucineNADPPyruvic AcidValine

Identifiers

PMID29483542
PMCPMC5827029
OpenAlexW2803160547

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.