Evidence map›Paper›PMID 29482919›Full record

ArticleVirology2018

SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world.

Meriadeg Ar Gouilh, Sébastien J Puechmaille, Laure Diancourt, Mathias Vandenbogaert, Jordi Serra-Cobo, Marc Lopez Roïg, Paul Brown, François Moutou, Valérie Caro, Astrid Vabret and 2 more

Registry-linked trialAbstract read
In one paragraph

Article in Virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04716543 (One-health Approach in Epidemiological Investigation of SARS-CoV-2 in Laos), which is not on this map. Cited by 57 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04716543 unknown statusnot on this mapstarted 2021, after this paper: background citation

One-health Approach in Epidemiological Investigation of SARS-CoV-2 in Laos

TypeobservationalSponsorANRS, Emerging Infectious DiseasesRan2021 to 2022Enrolled5,400ConditionsInfluenza -Like Illness, Covid19ArmsILI and COVID-19 detection
3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 3 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Meriadeg Ar GouilhInstitut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France; Normandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen, France. Electronic address: meriadeg.le-gouil@pasteur.fr.
Sébastien J PuechmailleGreifswald University, 17489, Greifswald, Germany; University College Dublin, Belfield, Dublin 4, Ireland; Chauves-souris Aveyron, 12310, Vimenet, France.
Laure DiancourtInstitut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.
Mathias VandenbogaertInstitut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.
Jordi Serra-CoboIRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain.
Marc Lopez RoïgIRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain.
Paul BrownFrench Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan, France.
François MoutouEcole Nationale Vétérinaire d'Alfort, 94704, Maison-Alfort, France.
Valérie CaroInstitut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.
Astrid VabretNormandie Université, EA2656, Groupe de Recherche sur l'Adaptation Microbienne, 14000, Caen, France.
Jean-Claude ManuguerraInstitut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France.
EPICOREM consortium

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence of SARS-CoV and MERS-CoV, triggered the discovery of a high diversity of coronaviruses in bats. Studies from Europe have shown that coronaviruses circulate in bats in France but this reflects only a fraction of the whole diversity. In the current study the diversity of coronaviruses circulating in western Europe was extensively explored. Ten alphacoronaviruses in eleven bat species belonging to the Miniopteridae, Vespertilionidae and Rhinolophidae families and, a SARS-CoV-related Betacoronavirus in Rhinolophus ferrumequinum were identified. The diversity and prevalence of bat coronaviruses presently reported from western Europe is much higher than previously described and includes a SARS-CoV sister group. This diversity demonstrates the dynamic evolution and circulation of coronaviruses in this species. That said, the identified coronaviruses were consistently associated with a particular bat species or genus, and these relationships were maintained no matter the geographic location. The observed phylogenetic grouping of coronaviruses from the same species in Europe and Asia, emphasizes the role of host/pathogen coevolution in this group.

Indexed as

AlphacoronavirusAnimalsBetacoronavirusChiropteraCoronavirus InfectionsGenetic VariationPhylogenySevere acute respiratory syndrome-related coronavirusBatsChiropteraCoronavirusDiversityEmergenceEuropeEvolutionMERS-CoVPhylogeneticsSARS-CoV

Identifiers

PMID29482919
PMCPMC7112086

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.