Evidence map›Paper›PMID 29481677›Full record

ArticleNucleic acids research2018

N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori.

Sumith Kumar, Bipul C Karmakar, Deepesh Nagarajan, Asish K Mukhopadhyay, Richard D Morgan, Desirazu N Rao

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 76 citations in OpenAlex.

  1. Methylation Dynamics inMicroorganisms · 2026
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  2. Global epidemiology ofMicrobiology spectrum · 2026
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  11. International journal of molecular sciences · 2025
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  15. Article
  16. Article
  17. TheJournal of bacteriology · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Sumith KumarDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Bipul C KarmakarDivision of Bacteriology, National Institute for Cholera and Enteric Diseases, Kolkata 700010, India.
Deepesh NagarajanDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Asish K MukhopadhyayDivision of Bacteriology, National Institute for Cholera and Enteric Diseases, Kolkata 700010, India.
Richard D MorganNew England Biolabs, 240 County Road, Ipswich, MA 01938, USA.
Desirazu N RaoDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Indian Institute of Science Bangalore · INNational Institute of Cholera and Enteric Diseases · INNew England Biolabs (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many bacterial genomes exclusively display an N4-methyl cytosine base (m4C), whose physiological significance is not yet clear. Helicobacter pylori is a carcinogenic bacterium and the leading cause of gastric cancer in humans. Helicobacter pylori strain 26695 harbors a single m4C cytosine methyltransferase, M2.HpyAII which recognizes 5' TCTTC 3' sequence and methylates the first cytosine residue. To understand the role of m4C modification, M2.hpyAII deletion strain was constructed. Deletion strain displayed lower adherence to host AGS cells and reduced potential to induce inflammation and apoptosis. M2.hpyAII gene deletion strain exhibited reduced capacity for natural transformation, which was rescued in the complemented strain carrying an active copy of M2.hpyAII gene in the genome. Genome-wide gene expression and proteomic analysis were carried out to discern the possible reasons behind the altered phenotype of the M2.hpyAII gene deletion strain. Upon the loss of m4C modification a total of 102 genes belonging to virulence, ribosome assembly and cellular components were differentially expressed. The present study adds a functional role for the presence of m4C modification in H. pylori and provides the first evidence that m4C signal acts as a global epigenetic regulator in H. pylori.

Indexed as

ProteomicsCytosineDNA MethylationGene Expression Regulation, BacterialGenome, BacterialHelicobacter InfectionsHelicobacter pyloriHumansCytosine

Identifiers

PMID29481677
PMCPMC5909468
OpenAlexW4254026408

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.