ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2018
An efficient approach for the development of genome-specific markers in allohexaploid wheat (Triticum aestivum L.) and its application in the construction of high-density linkage maps of the D genome.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Current status and future perspective of genomics-assisted breeding in wheat (Breeding science · 2026Article
- Identifying the physiological traits associated with DNA marker using genome wide association in wheat under heat stress.Scientific reports · 2024Article
- Genomic diversity of the Japanese wheat core collection and selection of alleles for agronomic traits in the breeding process.Breeding science · 2024Article
- Identification of a major QTL conferring resistance toBreeding science · 2024Article
- Natural variations of wheat EARLY FLOWERING 3 highlight their contributions to local adaptation through fine-tuning of heading time.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Allelic variations ofBreeding science · 2022Article
- Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- Developing core marker sets for effective genomic-assisted selection in wheat and barley breeding programs.Breeding science · 2022Article
- Genome-Wide Screening of Broad-Spectrum Resistance to Leaf Rust (Frontiers in plant science · 2022Article
- Novel quantitative trait loci for low grain cadmium concentration in common wheat (Breeding science · 2020Article
- IonBreeders: bioinformatics plugins toward genomics-assisted breeding.Breeding science · 2020Article
- Appraisal of wheat genomics for gene discovery and breeding applications: a special emphasis on advances in Asia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Multifamily QTL analysis and comprehensive design of genotypes for high-quality soft wheat.PloS one · 2020Article
- RNA Sequencing-Based Bulked Segregant Analysis Facilitates Efficient D-genome Marker Development for a Specific Chromosomal Region of Synthetic Hexaploid Wheat.International journal of molecular sciences · 2018Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In common wheat, the development of genotyping platforms has been hampered by the large size of the genome, its highly repetitive elements and its allohexaploid nature. However, recent advances in sequencing technology provide opportunities to resolve these difficulties. Using next-generation sequencing and gene-targeting sequence capture, 12,551 nucleotide polymorphisms were detected in the common wheat varieties 'Hatsumochi' and 'Kitahonami' and were assigned to chromosome arms using International Wheat Genome Sequencing Consortium survey sequences. Because the number of markers for D genome chromosomes in commercially available wheat single nucleotide polymorphism arrays is insufficient, we developed markers using a genome-specific amplicon sequencing strategy. Approximately 80% of the designed primers successfully amplified D genome-specific products, suggesting that by concentrating on a specific subgenome, we were able to design successful markers as efficiently as could be done in a diploid species. The newly developed markers were uniformly distributed across the D genome and greatly extended the total coverage. Polymorphisms were surveyed in six varieties, and 31,542 polymorphic sites and 5,986 potential marker sites were detected in the D genome. The marker development and genotyping strategies are cost effective, robust and flexible and may enhance multi-sample studies in the post-genomic era in wheat.
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