Evidence map›Paper›PMID 29481568›Full record

ArticlePLoS computational biology2018

Multiscale modeling of layer formation in epidermis.

Huijing Du, Yangyang Wang, Daniel Haensel, Briana Lee, Xing Dai, Qing Nie

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  4. Review
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  7. Review
  8. Article
  9. STOCHASTIC DYNAMICS OF CELL LINEAGE IN TISSUE HOMEOSTASIS.Discrete and continuous dynamical systems. Series B · 2019
    Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Huijing DuDepartment of Mathematics, University of Nebraska-Lincoln, Lincoln, NE, United States of America.
Yangyang WangDepartment of Mathematics, University of California Irvine, Irvine, CA, United States of America.
Daniel HaenselCenter for Complex Biological Systems, University of California Irvine, Irvine, CA, United States of America.
Briana LeeCenter for Complex Biological Systems, University of California Irvine, Irvine, CA, United States of America.
Xing DaiCenter for Complex Biological Systems, University of California Irvine, Irvine, CA, United States of America.
Qing NieDepartment of Mathematics, University of California Irvine, Irvine, CA, United States of America.ORCID 0000-0002-8804-3368
University of California, Irvine · USUniversity of Nebraska–Lincoln · US

Funding

Uncover Strategies Used By Biological SystemsP50GM076516 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2007 to 2016
$25.1M
Spatial Dynamics of Tissue and Organ Size ControlR01NS095355 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI CALOF, ANNE LEIGHTON, LANDER, ARTHUR D · 2015 to 2019
$2.1M
Control of epithelial plasticity and differentiation in hair follicle stem/progenitor cellsR01AR068074 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI DAI, XING · 2015 to 2019
$1.7M
Stochastic Dynamics and Noise Control in Patterning SystemsR01GM107264 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI NIE, QING, SCHILLING, THOMAS F · 2014 to 2017
$1.3M
EMT regulators in Epidermal MorphogenesisR56AR064532 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI DAI, XING · 2015 to 2015
$340k
NIAMS NIH HHS R01 AR068074NIAMS NIH HHS R56 AR064532NIGMS NIH HHS P50 GM076516NIGMS NIH HHS R01 GM107264NINDS NIH HHS R01 NS095355
6 · The paper itself

Abstract

The mammalian skin epidermis is a stratified epithelium composed of multiple layers of epithelial cells that exist in appropriate sizes and proportions, and with distinct boundaries separating each other. How the epidermis develops from a single layer of committed precursor cells to form a complex multilayered structure of multiple cell types remains elusive. Here, we construct stochastic, three-dimensional, and multiscale models consisting of a lineage of multiple cell types to study the control of epidermal development. Symmetric and asymmetric cell divisions, stochastic cell fate transitions within the lineage, extracellular morphogens, cell-to-cell adhesion forces, and cell signaling are included in model. A GPU algorithm was developed and implemented to accelerate the simulations. These simulations show that a balance between cell proliferation and differentiation during lineage progression is crucial for the development and maintenance of the epidermal tissue. We also find that selective intercellular adhesion is critical to sharpening the boundary between layers and to the formation of a highly ordered structure. The long-range action of a morphogen provides additional feedback regulations, enhancing the robustness of overall layer formation. Our model is built upon previous experimental findings revealing the role of Ovol transcription factors in regulating epidermal development. Direct comparisons of experimental and simulation perturbations show remarkable consistency. Taken together, our results highlight the major determinants of a well-stratified epidermis: balanced proliferation and differentiation, and a combination of both short- (symmetric/asymmetric division and selective cell adhesion) and long-range (morphogen) regulations. These underlying principles have broad implications for other developmental or regenerative processes leading to the formation of multilayered tissue structures, as well as for pathological processes such as epidermal wound healing.

Indexed as

Cell LineageModels, BiologicalAlgorithmsAnimalsBiomechanical PhenomenaCell AdhesionCell DifferentiationCell DivisionCell ProliferationComputer GraphicsComputer SimulationEpidermal CellsEpidermisGene Expression RegulationGene Expression Regulation, DevelopmentalHomeostasisTranscription Factors

Identifiers

PMID29481568
PMCPMC5843350
OpenAlexW2789208112

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.