Evidence map›Paper›PMID 29480728›Full record

ArticleThe Journal of organic chemistry2018

Comparative Ascaroside Profiling of Caenorhabditis Exometabolomes Reveals Species-Specific (ω) and (ω - 2)-Hydroxylation Downstream of Peroxisomal β-Oxidation.

Chuanfu Dong, Douglas K Reilly, Célia Bergame, Franziska Dolke, Jagan Srinivasan, Stephan H von Reuss

Open access · greenAbstract readComparative Study
In one paragraph

Article in The Journal of organic chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Advances in Microbial NMR Metabolomics.Advances in experimental medicine and biology · 2023
    Article
  7. Article
  8. Article
  9. Ascaroside Pheromones: Chemical Biology and Pleiotropic Neuronal Functions.International journal of molecular sciences · 2019
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Chuanfu DongDepartment of Bioorganic Chemistry , Max Planck Institute for Chemical Ecology , Hans-Knoell Strasse 8 , D-07745 Jena , Germany.ORCID 0000-0003-3043-7257
Douglas K ReillyDepartment of Biology and Biotechnology , Worcester Polytechnic Institute , 60 Prescott Street , Worcester , Massachusetts 01605 , United States.
Célia BergameLaboratory of Bioanalytical Chemistry , University of Neuchatel , Avenue de Bellevaux 51 , CH-2000 Neuchâtel , Switzerland.
Franziska DolkeDepartment of Bioorganic Chemistry , Max Planck Institute for Chemical Ecology , Hans-Knoell Strasse 8 , D-07745 Jena , Germany.
Jagan SrinivasanDepartment of Biology and Biotechnology , Worcester Polytechnic Institute , 60 Prescott Street , Worcester , Massachusetts 01605 , United States.ORCID 0000-0001-5449-7938
Stephan H von ReussDepartment of Bioorganic Chemistry , Max Planck Institute for Chemical Ecology , Hans-Knoell Strasse 8 , D-07745 Jena , Germany.ORCID 0000-0003-4325-5495
Bioanalytica (Switzerland) · CHWorcester Polytechnic Institute · USMax Planck Institute for Chemical Ecology · DEMax Planck Institute for Developmental Biology · DE

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Functional connectome of sex-specific processing of social cuesR01DC016058 · NIDCD · WORCESTER POLYTECHNIC INSTITUTE · PI SRINIVASAN, JAGAN · 2017 to 2021
$1.6M
NIDCD NIH HHS R01 DC016058NIH HHS P40 OD010440
6 · The paper itself

Abstract

Chemical communication in nematodes such as the model organism Caenorhabditis elegans is modulated by a variety of glycosides based on the dideoxysugar l-ascarylose. Comparative ascaroside profiling of nematode exometabolome extracts using a GC-EIMS screen reveals that several basic components including ascr#1 (asc-C7), ascr#2 (asc-C6-MK), ascr#3 (asc-ΔC9), ascr#5 (asc-ωC3), and ascr#10 (asc-C9) are highly conserved among the Caenorhabditis. Three novel side chain hydroxylated ascaroside derivatives were exclusively detected in the distantly related C. nigoni and C. afra. Molecular structures of these species-specific putative signaling molecules were elucidated by NMR spectroscopy and confirmed by total synthesis and chemical correlations. Biological activities were evaluated using attraction assays. The identification of (ω)- and (ω - 2)-hydroxyacyl ascarosides demonstrates how GC-EIMS-based ascaroside profiling facilitates the detection of novel ascaroside components and exemplifies how species-specific hydroxylation of ascaroside aglycones downstream of peroxisomal β-oxidation increases the structural diversity of this highly conserved class of nematode signaling molecules.

Indexed as

AnimalsCaenorhabditis elegansGas Chromatography-Mass SpectrometryHydroxylationMagnetic Resonance SpectroscopyOxidation-ReductionPeroxisomesSpectrometry, Mass, Electrospray Ionization

Identifiers

PMID29480728
PMCPMC6035057
OpenAlexW2788161772

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.