Evidence map›Paper›PMID 29480566›Full record

ArticleHelicobacter2018

High prevalence of Helicobacter pylori clarithromycin resistance mutations among Seattle patients measured by droplet digital PCR.

Sarah Talarico, Andrew S Korson, Christina K Leverich, Stephanie Park, Florencia G Jalikis, Melissa P Upton, Elizabeth Broussard, Nina R Salama

Abstract read
In one paragraph

Article in Helicobacter, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Predictors of Resistance in PediatricPathogens (Basel, Switzerland) · 2026
    Article
  2. Review
  3. Development of a colorimetric loop-mediated isothermal amplification assay for Helicobacter pylori detection.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
  4. Review
  5. Detection by Real-Time PCR ofMicroorganisms · 2024
    Article
  6. In Search for Reasons behindJournal of fungi (Basel, Switzerland) · 2023
    Article
  7. Review
  8. Racial Differences inGastro hep advances · 2022
    Article
  9. Review
  10. Article
  11. Diagnosis ofDiagnostics (Basel, Switzerland) · 2021
    Review
  12. What Is New inJournal of clinical medicine · 2021
    Review
  13. Molecular Detection of Antibiotic-Resistant Helicobacter pylori.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  14. Antibiotics (Basel, Switzerland) · 2020
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sarah TalaricoDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Andrew S KorsonDepartment of Medicine, Division of Gastroenterology, University of Washington, Seattle, WA, USA.
Christina K LeverichDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Stephanie ParkDepartment of Medicine, Division of Gastroenterology, University of Washington, Seattle, WA, USA.
Florencia G JalikisDepartment of Pathology, University of Washington, Seattle, WA, USA.
Melissa P UptonDepartment of Pathology, University of Washington, Seattle, WA, USA.
Elizabeth BroussardDepartment of Medicine, Division of Gastroenterology, University of Washington, Seattle, WA, USA.
Nina R SalamaDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-2762-1424
University of Washington · USFred Hutch Cancer Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
GENETIC REQUIREMENTS OF HELICOBACTER PYLORI INFECTIONR01AI054423 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Nina Salama · 2004 to 2026
$9.5M
Shared Host Genetics and Bacterial Adaptation in the Transmission of H. pyloriK01DK090103 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TALARICO, SARAH · 2012 to 2016
$501k
NCI NIH HHS P30 CA015704NIAID NIH HHS R01 AI054423NIDDK NIH HHS K01 DK090103
6 · The paper itself

Abstract

backgroundTreatment of Helicobacter pylori infection is often empiric; however, current guidelines for management of Helicobacter pylori infection advise against the use of standard triple therapy (clarithromycin, amoxicillin, and proton-pump inhibitor) when clarithromycin resistance exceeds 20%. We developed and tested a new culture-free assay to detect clarithromycin resistance-conferring mutations to determine the prevalence of H. pylori clarithromycin resistance in patients from the United States Pacific Northwest. MATERIALS AND

methodsDroplet digital PCR (ddPCR) was used to detect the H. pylori 23S rRNA gene, and resistance-conferring mutations, in archived, formalin-fixed, paraffin-embedded (FFPE) gastric tissue and to retrospectively determine the prevalence of clarithromycin-resistant H. pylori among 110 patients at an academic medical center in the Northwest United States between 2012 and 2014.

resultsOf 102 patients with the H. pylori 23S rRNA gene detected by the ddPCR assay, 45 (44%) had clarithromycin resistance mutations. Thirty-three of the 45 patients with clarithromycin resistance mutations had a mix of wild-type and resistance alleles. Prevalence of clarithromycin resistance mutations differed among racial groups and was highest among Asians, with mutations detected in 14 (67%) of the 21 patient samples.

conclusionsThe prevalence of clarithromycin resistance detected in this region exceeds 20%, indicating that standard triple therapy should not be the first-line antibiotic treatment for H. pylori infection. Culture-free assays for detecting clarithromycin resistance mutations can be performed on archived tissue samples and will aid in informing tailored treatment for effective H. pylori eradication.

Indexed as

ClarithromycinDrug Resistance, BacterialHelicobacter pyloriHumansMutationPolymerase Chain ReactionPrevalenceRetrospective StudiesClarithromycinclarithromycin resistanceculture-free assaydroplet digital PCRHelicobacter pylori

Identifiers

PMID29480566
PMCPMC5867253
OpenAlexW2791469803

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.