Evidence map›Paper›PMID 29476517›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2018

Identification, Quantitation, and Imaging of the Crustacean Peptidome.

Kellen DeLaney, Amanda Buchberger, Lingjun Li

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Quantitative Peptidomics: General Considerations.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  5. Peptidomics.Nature reviews. Methods primers · 2023
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Mass Spectrometric Profiling of Neuropeptides inACS chemical neuroscience · 2020
    Article
  15. PRESnovo: Prescreening Prior toJournal of the American Society for Mass Spectrometry · 2020
    Article
  16. Article
  17. Discovery of Missing Methylation Sites on Endogenous Peptides of Human Cell Lines.Journal of the American Society for Mass Spectrometry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kellen DeLaneyDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Amanda BuchbergerDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA.
Lingjun LiDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, USA. lingjun.li@wisc.edu.
University of Wisconsin–Madison · US

Funding

Training Program in Translational Cardiovascular Science (TPTCS)T32HL007936 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Lee Lochbaum Eckhardt, Gail A Robertson · 2001 to 2026
$11.6M
Mass Spectrometric Studies of Neuropeptides in FeedingR01DK071801 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI LINGJUN LI · 2006 to 2026
$6.7M
Multifaceted Mass Spectrometric Investigation of Neuropeptides in Callinectes sapidus during HypoxiaF31GM119365 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BUCHBERGER JONES, AMANDA RAE · 2016 to 2017
$62k
NHLBI NIH HHS T32 HL007936NIDDK NIH HHS R01 DK071801NIGMS NIH HHS F31 GM119365
6 · The paper itself

Abstract

Crustaceans serve as a useful, simplified model for studying peptides and neuromodulation, as they contain numerous neuropeptide homologs to mammals and enable electrophysiological studies at the single-cell and neural circuit levels. In particular, crustaceans contain well-defined neural networks, including the stomatogastric ganglion, esophageal ganglion, commissural ganglia, and several neuropeptide-rich organs, such as the brain, pericardial organs, and sinus glands. Due to the lack of a genomic database for crustacean peptides, an important step of crustacean peptidomics involves the discovery and identification of novel peptides and the construction of a database, more recently with the aid of mass spectrometry (MS). Herein, we present a general workflow and detailed methods for MS-based peptidomic analysis of crustacean tissue samples and circulating fluids. In conjunction with profiling, quantitation can also be performed with isotopic or isobaric labeling. Information regarding the localization patterns and changes of peptides can be studied via mass spectrometry imaging. Combining these sample preparation strategies and MS analytical techniques allows for a multifaceted approach to obtaining deep knowledge of crustacean peptidergic signaling pathways.

Indexed as

AnimalsBrachyuraImage Processing, Computer-AssistedMass SpectrometryNeuropeptidesProteomicsNeuropeptidesCrustaceanDe novo sequencingIsotopic/isobaric labelingMALDI mass spectrometry imagingMicrodialysisNeuropeptidesPeptidomeQuantitation

Identifiers

PMID29476517
PMCPMC11866940
OpenAlexW2788555212

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.