Evidence map›Paper›PMID 29476184›Full record

ArticleNature immunology2018

Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors.

Etienne Patin, Milena Hasan, Jacob Bergstedt, Vincent Rouilly, Valentina Libri, Alejandra Urrutia, Cécile Alanio, Petar Scepanovic, Christian Hammer, Friederike Jönsson and 20 more

Erratum issued 4 registry-linked trialsAbstract read
PubMed Publisher
In one paragraph

Article in Nature immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to 4 registered trials, which are not on this map. Cited by 185 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
185citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03905993 completednot on this map

Genetic & Environmental Determinants Of Immune Phenotype Variance: Establishing A Path Towards Personalized Medicine

TypeobservationalSponsorInstitut PasteurRan2012 to 2013Enrolled956ConditionsIndividuality, Healthy Subjects
NCT05174624 completednot on this mapstarted 2022, after this paper: background citation

The Healthy Human Global Project - Hong Kong: A Community-based Cross-sectional Study on Genetic and Environmental Determinants of Immune Phenotype Variance in a Healthy Asian Population - Establishing a Path Towards Personalized Medicine

TypeobservationalSponsorCentre for Immunology & InfectionRan2022 to 2023Enrolled1,026ConditionsHealthy, Immune System and Related DisordersArmsNo intervention
NCT05381857 completednot on this mapstarted 2022, after this paper: background citation

Genetic & Environmental Determinants Of Immune Phenotype Variance: A Longitudinal Assessment

TypeobservationalSponsorInstitut PasteurRan2022 to 2022Enrolled415ConditionsHealthy SubjectsArmsHuman Biological Samples
NCT07261111 naenrolling by invitationnot on this mapstarted 2026, after this paper: background citation

Effect of Subtle Energy Transmission and Tao Calligraphy Mindfulness Practice on Mitochondrial DNA (mtDNA) in Peripheral Blood Leukocytes

TypeinterventionalSponsorSha Research FoundationRan2026 to 2031Enrolled50ConditionsMitochondrial DNA, Quality of LifeArmsMindfulness practice with Tao Art (Calligraphy and Song Greatest Love)
3 · Its place in the literature

Who cites it

185 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  14. AI-Driven BCR Modeling for Precision Immunology.International journal of molecular sciences · 2026
    Review
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125 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors.

Etienne PatinUnit of Human Evolutionary Genetics, Department of Genomes & Genetics, Institut Pasteur, Paris, France. epatin@pasteur.fr.ORCID 0000-0002-9911-4459
Milena HasanCenter for Translation Research, Institut Pasteur, Paris, France.
Jacob BergstedtDepartment of Automatic Control, Lund University, Lund, Sweden.ORCID 0000-0002-9279-6936
Vincent RouillyCenter of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, Paris, France.
Valentina LibriCenter for Translation Research, Institut Pasteur, Paris, France.
Alejandra UrrutiaCenter for Translation Research, Institut Pasteur, Paris, France.
Cécile AlanioCenter for Translation Research, Institut Pasteur, Paris, France.ORCID 0000-0003-2785-7445
Petar ScepanovicSchool of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Christian HammerSchool of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Friederike JönssonAntibodies in Therapy and Pathology, Department of Immunology, Institut Pasteur, Paris, France.
Benoît BeitzCenter for Translation Research, Institut Pasteur, Paris, France.
Hélène QuachUnit of Human Evolutionary Genetics, Department of Genomes & Genetics, Institut Pasteur, Paris, France.
Yoong Wearn LimDepartment of Cancer Immunology, Genentech, South San Francisco, CA, USA.
Julie HunkapillerDepartment of Human Genetics, Genentech, South San Francisco, CA, USA.
Magge ZepedaEmployee Donation Program, Genentech, South San Francisco, CA, USA.
Cherie GreenDepartment of Development Sciences, Genentech, South San Francisco, CA, USA.
Barbara PiaseckaUnit of Human Evolutionary Genetics, Department of Genomes & Genetics, Institut Pasteur, Paris, France.
Claire LeloupDepartment of Human Genetics, Genentech, South San Francisco, CA, USA.
Lars RoggeCenter for Translation Research, Institut Pasteur, Paris, France.
François HuetzINSERM U783, Faculté de Médecine, Site Necker-Enfants Malades, Université Paris Descartes, Paris, France.
Isabelle PeguilletCenter of Clinical Investigations CIC-BT1428 IGR/Curie, Paris, France.
Olivier LantzCenter of Clinical Investigations CIC-BT1428 IGR/Curie, Paris, France.
Magnus FontesInternational Group for Data Analysis, Institut Pasteur, Paris, France.
James P Di SantoCenter for Translation Research, Institut Pasteur, Paris, France.
Stéphanie ThomasCenter for Translation Research, Institut Pasteur, Paris, France.
Jacques FellayDepartment of Cancer Immunology, Genentech, South San Francisco, CA, USA.ORCID 0000-0002-8240-939X
Darragh DuffyCenter for Translation Research, Institut Pasteur, Paris, France.
Lluís Quintana-MurciUnit of Human Evolutionary Genetics, Department of Genomes & Genetics, Institut Pasteur, Paris, France.ORCID 0000-0003-2429-6320
Matthew L AlbertCenter for Translation Research, Institut Pasteur, Paris, France. albertm7@gene.com.ORCID 0000-0001-7285-6973
Milieu Intérieur Consortium

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The quantification and characterization of circulating immune cells provide key indicators of human health and disease. To identify the relative effects of environmental and genetic factors on variation in the parameters of innate and adaptive immune cells in homeostatic conditions, we combined standardized flow cytometry of blood leukocytes and genome-wide DNA genotyping of 1,000 healthy, unrelated people of Western European ancestry. We found that smoking, together with age, sex and latent infection with cytomegalovirus, were the main non-genetic factors that affected variation in parameters of human immune cells. Genome-wide association studies of 166 immunophenotypes identified 15 loci that showed enrichment for disease-associated variants. Finally, we demonstrated that the parameters of innate cells were more strongly controlled by genetic variation than were those of adaptive cells, which were driven by mainly environmental exposure. Our data establish a resource that will generate new hypotheses in immunology and highlight the role of innate immunity in susceptibility to common autoimmune diseases.

Indexed as

Adaptive ImmunityAdultAgedFemaleGenetic VariationGenome-Wide Association StudyHumansImmunity, InnateImmunophenotypingMaleMiddle AgedYoung Adult

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.