Evidence map›Paper›PMID 29476097›Full record

ArticleNature communications2018

Functionally distinct disease-associated fibroblast subsets in rheumatoid arthritis.

Fumitaka Mizoguchi, Kamil Slowikowski, Kevin Wei, Jennifer L Marshall, Deepak A Rao, Sook Kyung Chang, Hung N Nguyen, Erika H Noss, Jason D Turner, Brandon E Earp and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 353 papers.

0numbers the graph read from it
0cells of the map it votes in
353citing papers in PubMed
36.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

353 citing papers in PubMed, 580 citations in OpenAlex.

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293 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 5 institutions in 5 countries.

Fumitaka MizoguchiDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Kamil SlowikowskiDivision of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02446, USA.ORCID http://orcid.org/0000-0002-2843-6370
Kevin WeiDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Jennifer L MarshallRheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Queen Elizabeth Hospital, Birmingham, B15 2WB, UK.
Deepak A RaoDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Sook Kyung ChangDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Hung N NguyenDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Erika H NossDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Jason D TurnerRheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Queen Elizabeth Hospital, Birmingham, B15 2WB, UK.
Brandon E EarpDepartment of Orthopedic Surgery, Brigham and Women's Hospital, Boston, MA, 02115, USA.
Philip E BlazarDepartment of Orthopedic Surgery, Brigham and Women's Hospital, Boston, MA, 02115, USA.
John WrightDepartment of Orthopedic Surgery, Brigham and Women's Hospital, Boston, MA, 02115, USA.
Barry P SimmonsDepartment of Orthopedic Surgery, Brigham and Women's Hospital, Boston, MA, 02115, USA.
Laura T DonlinArthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY, 10021, USA.
George D KallioliasArthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY, 10021, USA.ORCID http://orcid.org/0000-0002-4427-8245
Susan M GoodmanArthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY, 10021, USA.
Vivian P BykerkArthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY, 10021, USA.
Lionel B IvashkivArthritis and Tissue Degeneration Program and the David Z. Rosensweig Genomics Research Center, Hospital for Special Surgery, New York, NY, 10021, USA.ORCID http://orcid.org/0000-0002-9951-0646
James A LedererDepartment of Surgery, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Nir HacohenBroad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Peter A NigrovicDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0002-2126-3702
Andrew FilerRheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Queen Elizabeth Hospital, Birmingham, B15 2WB, UK.
Christopher D BuckleyRheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Queen Elizabeth Hospital, Birmingham, B15 2WB, UK.ORCID http://orcid.org/0000-0001-6924-6402
Soumya RaychaudhuriDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA. soumya@broadinstitute.org.
Michael B BrennerDivision of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA. mbrenner@research.bwh.harvard.edu.
Brigham and Women's Hospital · USHospital for Special Surgery · USQueen Elizabeth Hospital Birmingham · GBBroad Institute · USTokyo Medical and Dental University · JP

Funding

Metabolomics Core U19AI111224 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH, MURRAY, MEGAN B · 2015 to 2021
$20.4M
Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Joint Biology Consortium Resource-based CenterP30AR070253 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Peter A Nigrovic, Jeffrey Andrew Sparks · 2016 to 2026
$9.4M
CYTOKINE REGULATION OF RA SYNOVIOCYTE PHENOTYPER01AR046713 · NIAMS · HOSPITAL FOR SPECIAL SURGERY · PI IVASHKIV, LIONEL B · 1999 to 2025
$8.3M
Genetic predictors of response to anti-TNF therapy in rheumatoid arthritisU01GM092691 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI BRENNER, MICHAEL B., RAYCHAUDHURI, SOUMYA · 2010 to 2014
$7.5M
Discovery and Functional Impact of Common and Rare Variants in RAR01AR063759 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Soumya Raychaudhuri · 2013 to 2026
$5.4M
Ly6 family members in neutrophil biologyR01AR065538 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI NIGROVIC, PETER A · 2014 to 2024
$4.0M
Expanded fibroblast subset drives pathology in rheumatoid arthritisR01AR063709 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI BRENNER, MICHAEL B., RAYCHAUDHURI, SOUMYA · 2015 to 2025
$3.3M
Functionally specialized components of disease heritability in ENCODE dataU01HG009379 · NHGRI · HARVARD SCHOOL OF PUBLIC HEALTH · PI PRICE, ALKES L, RAYCHAUDHURI, SOUMYA · 2017 to 2021
$2.5M
Cadherin11 in cancer & rheumatoid arthritis: Common target, common therapies? (5)R01CA170653 · NCI · GEORGETOWN UNIVERSITY · PI BYERS, STEPHEN W · 2012 to 2015
$2.4M
Molecular Pathways in Treatment Response and Flare in RAUH2AR067691 · NIAMS · HOSPITAL FOR SPECIAL SURGERY · PI BYKERK, VIVIAN P, IVASHKIV, LIONEL B · 2014 to 2020
$2.0M
Cadherin-11 growth factor receptor interactions in RA fibroblast hyperplasiaK08AR063696 · NIAMS · UNIVERSITY OF WASHINGTON · PI NOSS, ERIKA HEIDI · 2013 to 2017
$729k
NCI NIH HHS R01 CA170653NHGRI NIH HHS T32 HG002295NHGRI NIH HHS U01 HG009379NIAID NIH HHS U19 AI111224NIAMS NIH HHS F31 AR070582NIAMS NIH HHS K08 AR063696NIAMS NIH HHS P30 AR070253NIAMS NIH HHS R01 AR046713NIAMS NIH HHS R01 AR063709NIAMS NIH HHS R01 AR063759NIAMS NIH HHS R01 AR065538NIAMS NIH HHS UH2 AR067691NIGMS NIH HHS U01 GM092691Wellcome Trust
6 · The paper itself

Abstract

Fibroblasts regulate tissue homeostasis, coordinate inflammatory responses, and mediate tissue damage. In rheumatoid arthritis (RA), synovial fibroblasts maintain chronic inflammation which leads to joint destruction. Little is known about fibroblast heterogeneity or if aberrations in fibroblast subsets relate to pathology. Here, we show functional and transcriptional differences between fibroblast subsets from human synovial tissues using bulk transcriptomics of targeted subpopulations and single-cell transcriptomics. We identify seven fibroblast subsets with distinct surface protein phenotypes, and collapse them into three subsets by integrating transcriptomic data. One fibroblast subset, characterized by the expression of proteins podoplanin, THY1 membrane glycoprotein and cadherin-11, but lacking CD34, is threefold expanded in patients with RA relative to patients with osteoarthritis. These fibroblasts localize to the perivascular zone in inflamed synovium, secrete proinflammatory cytokines, are proliferative, and have an in vitro phenotype characteristic of invasive cells. Our strategy may be used as a template to identify pathogenic stromal cellular subsets in other complex diseases.

Indexed as

Arthritis, RheumatoidCadherinsCells, CulturedFibroblastsHumansSynovial MembraneThy-1 AntigensTranscriptomeCadherinsosteoblast cadherinThy-1 Antigens

Identifiers

PMID29476097
PMCPMC5824882
OpenAlexW2791033272

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.