Evidence map›Paper›PMID 29476089›Full record

ArticleScientific reports2018

Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent.

Tom Froese, Jorge I Campos, Kosuke Fujishima, Daisuke Kiga, Nathaniel Virgo

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Order of amino acid recruitment into the genetic code resolved by last universal common ancestor's protein domains.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. The Standard Genetic Code can Evolve from a Two-Letter GC Code Without Information Loss or Costly Reassignments.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Tom FroeseInstitute for Applied Mathematics and Systems Research (IIMAS), National Autonomous University of Mexico (UNAM), Mexico City, 04510, Mexico. t.froese@gmail.com.ORCID 0000-0002-9899-5274
Jorge I CamposCenter for the Sciences of Complexity (C3), National Autonomous University of Mexico (UNAM), Mexico City, 04510, Mexico.
Kosuke FujishimaEarth-Life Science Institute, Tokyo Institute of Technology, Meguro-ku, Tokyo, 152-8550, Japan.
Daisuke KigaFaculty of Science and Engineering, School of Advanced Science and Engineering, Waseda University, Shinjuku, Tokyo, 169-8555, Japan.
Nathaniel VirgoEarth-Life Science Institute, Tokyo Institute of Technology, Meguro-ku, Tokyo, 152-8550, Japan.
Tokyo Institute of Technology · JPUniversidad Nacional Autónoma de México · MXWaseda University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Theories of the origin of the genetic code typically appeal to natural selection and/or mutation of hereditable traits to explain its regularities and error robustness, yet the present translation system presupposes high-fidelity replication. Woese's solution to this bootstrapping problem was to assume that code optimization had played a key role in reducing the effect of errors caused by the early translation system. He further conjectured that initially evolution was dominated by horizontal exchange of cellular components among loosely organized protocells ("progenotes"), rather than by vertical transmission of genes. Here we simulated such communal evolution based on horizontal transfer of code fragments, possibly involving pairs of tRNAs and their cognate aminoacyl tRNA synthetases or a precursor tRNA ribozyme capable of catalysing its own aminoacylation, by using an iterated learning model. This is the first model to confirm Woese's conjecture that regularity, optimality, and (near) universality could have emerged via horizontal interactions alone.

Indexed as

Evolution, MolecularGenetic CodeGene Transfer, HorizontalModels, GeneticProtein BiosynthesisAminoacylationAmino Acyl-tRNA SynthetasesCodonComputer SimulationExtinction, BiologicalOrigin of LifeRNA, CatalyticRNA, TransferAmino Acyl-tRNA SynthetasesCodonRNA, CatalyticRNA, Transfer

Identifiers

PMID29476089
PMCPMC5824800
OpenAlexW2791585440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.