Evidence map›Paper›PMID 29475951›Full record

ArticleThe Journal of biological chemistry2018

Soluble syntaxin 3 functions as a transcriptional regulator.

Adrian J Giovannone, Christine Winterstein, Pallavi Bhattaram, Elena Reales, Seng Hui Low, Julie E Baggs, Mimi Xu, Matthew A Lalli, John B Hogenesch, Thomas Weimbs

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Syntaxin 3B: A SNARE Protein Required for Vision.International journal of molecular sciences · 2024
    Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Adrian J GiovannoneFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625.
Christine WintersteinFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625.
Pallavi BhattaramFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625.
Elena RealesFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625.
Seng Hui LowFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625.
Julie E Baggsthe Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and.
Mimi XuFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625.
Matthew A LalliFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625.
John B Hogeneschthe Center for Chronobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio 45229.
Thomas WeimbsFrom the Department of Molecular, Cellular, and Developmental Biology and Neuroscience Research Institute, University of California, Santa Barbara, California 93106-9625, weimbs@ucsb.edu.
University of California, Santa Barbara · USCincinnati Children's Hospital Medical Center · USUniversity of Pennsylvania · US

Funding

Molecular, Cellular and Physiological Mechanisms of the Mammalian Circadian ClockR01NS054794 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI HOGENESCH, JOHN B, LIU, ANDREW C. · 2007 to 2022
$8.1M
STAT Regulation by Polycystin-1R01DK062338 · NIDDK · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI WEIMBS, THOMAS · 2002 to 2011
$2.6M
Multiscale Analysis of Inter-Clock CommunicationR01HL097800 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A, HOGENESCH, JOHN B · 2009 to 2012
$2.0M
A Novel Role of Syntaxin 3 as a Transcription RegulatorR21DK095248 · NIDDK · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI WEIMBS, THOMAS · 2012 to 2013
$404k
NHLBI NIH HHS R01 HL097800NIDDK NIH HHS R01 DK062338NIDDK NIH HHS R21 DK095248NINDS NIH HHS R01 NS054794
6 · The paper itself

Abstract

Syntaxins are a conserved family of SNARE proteins and contain C-terminal transmembrane anchors required for their membrane fusion activity. Here we show that Stx3 (syntaxin 3) unexpectedly also functions as a nuclear regulator of gene expression. We found that alternative splicing creates a soluble isoform that we termed Stx3S, lacking the transmembrane anchor. Soluble Stx3S binds to the nuclear import factor RanBP5 (RAN-binding protein 5), targets to the nucleus, and interacts physically and functionally with several transcription factors, including ETV4 (ETS variant 4) and ATF2 (activating transcription factor 2). Stx3S is differentially expressed in normal human tissues, during epithelial cell polarization, and in breast cancer

Indexed as

Cell ProliferationGene Expression RegulationSignal TransductionAdenovirus E1A ProteinsAnimalsbeta KaryopherinsCaco-2 CellsCell NucleusChlorocebus aethiopsCOS CellsDogsHEK293 CellsHeLa CellsHumansMadin Darby Canine Kidney CellsProtein BindingAdenovirus E1A Proteinsbeta KaryopherinsETV4 protein, humanIPO5 protein, humanProto-Oncogene ProteinsProto-Oncogene Proteins c-etsQa-SNARE Proteinsalternative splicingmembrane fusionmembrane traffickingsignal transductionSNARE proteinssplice variantsyntaxin signalingtranscriptional regulatortranscription coregulator

Identifiers

PMID29475951
PMCPMC5900775
OpenAlexW2950282435

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.